In [1]:
# Parameters
data_name = "Lhx9"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:18:12,298 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Lhx9: Motif: M00406_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Lhx9: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 4.862430000000001e-06

Pattern: motif4.motif

Significance: 0.00858817

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 1.83524e-06

Pattern: motif5.motif

Significance: 0.030745599999999994

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 3.01147e-06

Pattern: motif3.motif

Significance: 0.00607199

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0309658

Pattern: motif14.motif

Significance: 0.05582430000000001

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0165122

Pattern: motif13.motif

Significance: 0.0093836

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00219671

Pattern: motif16.motif

Significance: 0.011185200000000001

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.000510745

Pattern: motif9.motif

Significance: 0.00678937

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0467059

Pattern: motif7.motif

Significance: 0.0427586

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.04473169999999999

Pattern: motif3.motif

Significance: 0.0166082

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00260632

Pattern: motif13.motif

Significance: 0.010422200000000001

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 7.3724e-05

Pattern: motif2.motif

Significance: 0.00307186

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00437049

Pattern: motif6.motif

Significance: 0.0117692

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00024089

Pattern: motif2.motif

Significance: 0.00361345

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 4.4908000000000004e-05

Pattern: motif3.motif

Significance: 0.00386752

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00190837

Pattern: motif4.motif

Significance: 0.00507916

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 7.2581299999999996e-06

Pattern: motif2.motif

Significance: 0.00277144

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.0136471

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0567813

/

Pattern: metacluster_0/pattern_8

Significance: 0.00187854

Pattern: motif3.motif

Significance: 0.0121884

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00021763

Pattern: motif6.motif

Significance: 0.0132139

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.00370113

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 3.51217e-06

Pattern: motif2.motif

Significance: 0.00313992

Unique Cell types only TF-MoDISco finds Lhx9: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0240777

/

Pattern: metacluster_0/pattern_25

Significance: 0.00254558

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0103002

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0038256

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0006466880000000001

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 1.1840999999999999e-05

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0349385

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.022274799999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0303168

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0293974

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000828394

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.000272822

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0346939

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.025858099999999995

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00263329

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00179984

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.032195499999999995

Absent
Unique Cell types only Homer finds Lhx9: #7

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.043301400000000004

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0356255

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0163811

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.0194615

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.026679400000000002

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0124966

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839