In [1]:
# Parameters
data_name = "Lhx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:17:22,219 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Lhx2: Motif: M09169_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Lhx2: #25

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00323974

Pattern: motif4.motif

Significance: 0.0494171

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00231597

Pattern: motif5.motif

Significance: 0.0553951

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0019614999999999997

Pattern: motif3.motif

Significance: 0.029958999999999996

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.047305

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0452635

Pattern: motif3.motif

Significance: 0.0356255

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0531254

Pattern: motif6.motif

Significance: 0.0590163

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0559129

Pattern: motif9.motif

Significance: 0.0546864

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.05807230000000001

Pattern: motif13.motif

Significance: 0.014377700000000002

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0371747

Pattern: motif16.motif

Significance: 0.015423599999999999

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00356748

Pattern: motif9.motif

Significance: 0.00678937

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0491664

Pattern: motif7.motif

Significance: 0.0566153

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.04473169999999999

Pattern: motif3.motif

Significance: 0.0209787

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00500946

Pattern: motif13.motif

Significance: 0.00897489

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.0132613

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00268293

Pattern: motif2.motif

Significance: 0.00339586

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00703861

Pattern: motif6.motif

Significance: 0.019974900000000004

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00241719

Pattern: motif2.motif

Significance: 0.00389667

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0019288

Pattern: motif3.motif

Significance: 0.00739457

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00261376

Pattern: motif4.motif

Significance: 0.00461458

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00282468

Pattern: motif2.motif

Significance: 0.00277144

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.0193995

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0530591

/

Pattern: metacluster_0/pattern_8

Significance: 0.00388276

Pattern: motif3.motif

Significance: 0.0151553

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00263525

Pattern: motif6.motif

Significance: 0.0182123

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011123000000000001

Pattern: motif14.motif

Significance: 0.00755007

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00255908

Pattern: motif2.motif

Significance: 0.00330322

Unique Cell types only TF-MoDISco finds Lhx2: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.03938130000000001

/

Pattern: metacluster_0/pattern_25

Significance: 0.010620600000000001

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00984593

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0163415

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0113179

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0577375

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00446517

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0502854

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0341137

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0263468

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.03421969999999999

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0464695

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0225004

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00423294

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.059681200000000004

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05354640000000001

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0025473

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0042964

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0253435

Absent
Unique Cell types only Homer finds Lhx2: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.018381

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0135553

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0487358

LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0510414