In [1]:
# Parameters
data_name = "Alx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:57:28,801 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Alx1: Motif: M00472_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Alx1: #22

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0158611

Pattern: motif4.motif

Significance: 0.059499500000000004

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0405764

Pattern: motif5.motif

Significance: 0.030193900000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0556195

Pattern: motif3.motif

Significance: 0.0416619

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0537255

Pattern: motif3.motif

Significance: 0.0364509

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0447468

Pattern: motif6.motif

Significance: 0.026036200000000002

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.058918700000000004

Pattern: motif9.motif

Significance: 0.040648199999999995

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.052506500000000005

Pattern: motif13.motif

Significance: 0.016939700000000002

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0534957

Pattern: motif16.motif

Significance: 0.0201643

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.051341099999999994

Pattern: motif9.motif

Significance: 0.045901

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0451408

Pattern: motif3.motif

Significance: 0.0476586

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0105555

Pattern: motif13.motif

Significance: 0.0565193

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.040317

Pattern: motif2.motif

Significance: 0.00557815

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0129474

Pattern: motif6.motif

Significance: 0.0211703

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0537052

Pattern: motif2.motif

Significance: 0.00546664

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0426085

Pattern: motif3.motif

Significance: 0.00595134

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0460416

Pattern: motif4.motif

Significance: 0.048400599999999995

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0110831

Pattern: motif2.motif

Significance: 0.00482473

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.027206099999999997

Pattern: motif10.motif

Significance: 0.025434400000000003

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0567813

/

Pattern: metacluster_0/pattern_8

Significance: 0.032445999999999996

Pattern: motif3.motif

Significance: 0.019767

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00699703

Pattern: motif6.motif

Significance: 0.020634700000000002

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.023116099999999997

Pattern: motif14.motif

Significance: 0.03173959999999999

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0533668

Pattern: motif2.motif

Significance: 0.00576741

Unique Cell types only TF-MoDISco finds Alx1: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0278427

/

Pattern: metacluster_0/pattern_25

Significance: 0.010620600000000001

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0127158

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0110528

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0578571

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0220956

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0362984

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0418372

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0359206

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0451724

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0505859

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.059073099999999996

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.015766899999999997

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.03993119999999999

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.028142700000000003

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0321324

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.052343100000000004

Absent
Unique Cell types only Homer finds Alx1: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0584003

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0222635

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0513047

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0538827

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.018345300000000002