Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/U_1_S28_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4127
Total background sequences = 20945
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-234	-5.408e+02	28.23%	10.02%	317.5bp (216.1bp)	REB1(MacIsaac)/Yeast(0.993) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-115	-2.658e+02	36.44%	20.91%	323.9bp (244.5bp)	RSC3/MA0374.1/Jaspar(0.873) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-97	-2.242e+02	39.91%	25.01%	350.8bp (200.6bp)	hb/dmmpmm(SeSiMCMC)/fly(0.901) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-55	-1.280e+02	8.87%	3.51%	291.2bp (210.6bp)	IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer(0.968) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-47	-1.086e+02	41.82%	31.10%	357.2bp (204.0bp)	TATA-box/SacCer-Promoters/Homer(0.893) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-34	-7.896e+01	8.84%	4.40%	306.0bp (199.8bp)	OPI1/Literature(Harbison)/Yeast(0.905) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-33	-7.756e+01	8.12%	3.92%	284.3bp (201.4bp)	FHL1(MacIsaac)/Yeast(0.824) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-31	-7.208e+01	8.92%	4.62%	358.7bp (229.4bp)	SeqBias: CA-repeat(0.870) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-30	-7.068e+01	7.85%	3.89%	384.7bp (208.9bp)	hkb/MA0450.1/Jaspar(0.756) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-30	-7.044e+01	12.62%	7.45%	326.2bp (208.3bp)	IME1(MacIsaac)/Yeast(0.690) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-29	-6.681e+01	23.07%	16.26%	302.3bp (220.8bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.968) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-26	-6.059e+01	17.35%	11.66%	340.9bp (197.1bp)	YER130C/MA0423.1/Jaspar(0.845) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-23	-5.302e+01	7.41%	4.02%	291.2bp (183.1bp)	GT-1/MA1020.1/Jaspar(0.773) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-22	-5.128e+01	9.84%	5.91%	380.9bp (185.3bp)	CHA4(MacIsaac)/Yeast(0.859) More Information \| Similar Motifs Found	motif file (matrix)