Information for 5-CACGTGCC (Motif 4)


Reverse Opposite:

p-value:1e-55
log p-value:-1.280e+02
Information Content per bp:1.827
Number of Target Sequences with motif366.0
Percentage of Target Sequences with motif8.87%
Number of Background Sequences with motif734.9
Percentage of Background Sequences with motif3.51%
Average Position of motif in Targets388.6 +/- 291.2bp
Average Position of motif in Background278.1 +/- 210.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CACGTGCC
CACGTGCC

BHLHE40/MA0464.2/Jaspar

Match Rank:2
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--CACGTGCC
ATCACGTGAC

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-CACGTGCC-
KCACGTGMCN

HEY1/MA0823.1/Jaspar

Match Rank:4
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--CACGTGCC
GACACGTGCC

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CACGTGCC
CACGTGNC

HBI1/MA1025.1/Jaspar

Match Rank:6
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGCC--
NGCACGTGCNNN

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CACGTGCC
CACGTGDC

PHYPADRAFT_48267/MA1021.1/Jaspar

Match Rank:8
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-CACGTGCC
CCACGTGC-

BIM2/MA0965.1/Jaspar

Match Rank:9
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--CACGTGCC
GGCACGTGCC

MNT/MA0825.1/Jaspar

Match Rank:10
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--CACGTGCC
ACCACGTGCC