Information for 18-CCTTAACC (Motif 13)


Reverse Opposite:

p-value:1e-23
log p-value:-5.302e+01
Information Content per bp:1.916
Number of Target Sequences with motif306.0
Percentage of Target Sequences with motif7.41%
Number of Background Sequences with motif840.8
Percentage of Background Sequences with motif4.02%
Average Position of motif in Targets387.0 +/- 291.2bp
Average Position of motif in Background273.7 +/- 183.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GT-1/MA1020.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CCTTAACC-
-GTTAACCA

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CCTTAACC-
TGACCTTGACCT

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CCTTAACC-
TGACCTTGACCT

cad/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCTTAACC
GCATAAA-

MYBL1/MA0776.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCTTAACC--
ACCGTTAACGGT

Oc/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCTTAACC--
NNTTAATCCN

Gsc/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTTAACC--
NNTTAATCCN

oc/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCTTAACC----
NCNCTAATCCGNT

bap/MA0211.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCTTAACC
CACTTAA--

Kr/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCTTAACC----
--TTAACCCGTT