Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Ct_2_S23_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3977
Total background sequences = 22932
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-226	-5.215e+02	23.26%	7.07%	271.3bp (196.7bp)	REB1(MacIsaac)/Yeast(0.991) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-92	-2.129e+02	34.65%	20.64%	304.0bp (219.0bp)	RSC3/MA0374.1/Jaspar(0.913) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-64	-1.489e+02	48.50%	35.31%	316.6bp (185.4bp)	PB0192.1_Tcfap2e_2/Jaspar(0.892) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-48	-1.113e+02	10.64%	4.88%	256.9bp (196.5bp)	UNE10/MA1074.1/Jaspar(0.947) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-47	-1.105e+02	26.70%	17.38%	360.0bp (204.5bp)	Deaf1/dmmpmm(Down)/fly(0.725) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-47	-1.088e+02	38.45%	27.79%	354.3bp (186.6bp)	TATA-box/SacCer-Promoters/Homer(0.889) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-35	-8.140e+01	10.16%	5.21%	381.4bp (169.5bp)	CHA4(MacIsaac)/Yeast(0.874) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-29	-6.870e+01	8.15%	4.09%	330.5bp (188.6bp)	SeqBias: CA-repeat(0.867) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-26	-6.080e+01	16.67%	10.99%	311.2bp (196.0bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.900) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-18	-4.282e+01	14.79%	10.24%	321.3bp (176.6bp)	DOF2(C2C2(Zn) Dof)/Zea mays/AthaMap(0.696) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-18	-4.207e+01	14.73%	10.24%	312.4bp (184.8bp)	STP4/MA0397.1/Jaspar(0.709) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-15	-3.671e+01	4.50%	2.30%	326.8bp (163.4bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-15	-3.592e+01	3.75%	1.79%	202.5bp (158.6bp)	PB0098.1_Zfp410_1/Jaspar(0.704) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-14	-3.406e+01	4.68%	2.49%	218.1bp (182.1bp)	NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast(0.773) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-13	-3.034e+01	5.10%	2.92%	263.5bp (183.6bp)	OPI1/Literature(Harbison)/Yeast(0.856) More Information \| Similar Motifs Found	motif file (matrix)