| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-228 | -5.267e+02 | 0.0000 | 1345.0 | 33.82% | 3122.5 | 13.61% | motif file (matrix) |
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| 2 |  | REB1/SacCer-Promoters/Homer | 1e-189 | -4.363e+02 | 0.0000 | 875.0 | 22.00% | 1667.4 | 7.27% | motif file (matrix) |
pdf |
| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-72 | -1.674e+02 | 0.0000 | 1848.0 | 46.47% | 7484.9 | 32.63% | motif file (matrix) |
pdf |
| 4 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-62 | -1.429e+02 | 0.0000 | 530.0 | 13.33% | 1393.3 | 6.07% | motif file (matrix) |
pdf |
| 5 |  | SeqBias: CG-repeat | 1e-50 | -1.172e+02 | 0.0000 | 691.0 | 17.37% | 2206.5 | 9.62% | motif file (matrix) |
pdf |
| 6 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-49 | -1.147e+02 | 0.0000 | 589.0 | 14.81% | 1780.6 | 7.76% | motif file (matrix) |
pdf |
| 7 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-48 | -1.106e+02 | 0.0000 | 393.0 | 9.88% | 1005.6 | 4.38% | motif file (matrix) |
pdf |
| 8 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-47 | -1.087e+02 | 0.0000 | 377.0 | 9.48% | 952.5 | 4.15% | motif file (matrix) |
pdf |
| 9 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-46 | -1.066e+02 | 0.0000 | 508.0 | 12.77% | 1485.7 | 6.48% | motif file (matrix) |
pdf |
| 10 |  | SFP1/SacCer-Promoters/Homer | 1e-46 | -1.060e+02 | 0.0000 | 599.0 | 15.06% | 1875.9 | 8.18% | motif file (matrix) |
pdf |
| 11 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-39 | -9.065e+01 | 0.0000 | 933.0 | 23.46% | 3538.1 | 15.42% | motif file (matrix) |
pdf |
| 12 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-38 | -8.791e+01 | 0.0000 | 353.0 | 8.88% | 954.9 | 4.16% | motif file (matrix) |
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| 13 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-38 | -8.776e+01 | 0.0000 | 425.0 | 10.69% | 1246.4 | 5.43% | motif file (matrix) |
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| 14 |  | E-box(bHLH)/Promoter/Homer | 1e-33 | -7.611e+01 | 0.0000 | 128.0 | 3.22% | 205.0 | 0.89% | motif file (matrix) |
pdf |
| 15 |  | E-box/Arabidopsis-Promoters/Homer | 1e-32 | -7.402e+01 | 0.0000 | 453.0 | 11.39% | 1449.6 | 6.32% | motif file (matrix) |
pdf |
| 16 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-31 | -7.154e+01 | 0.0000 | 506.0 | 12.72% | 1700.4 | 7.41% | motif file (matrix) |
pdf |
| 17 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-30 | -6.924e+01 | 0.0000 | 758.0 | 19.06% | 2895.9 | 12.63% | motif file (matrix) |
pdf |
| 18 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-28 | -6.465e+01 | 0.0000 | 828.0 | 20.82% | 3284.8 | 14.32% | motif file (matrix) |
pdf |
| 19 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-25 | -5.925e+01 | 0.0000 | 1132.0 | 28.46% | 4893.5 | 21.33% | motif file (matrix) |
pdf |
| 20 |  | TOD6?/SacCer-Promoters/Homer | 1e-25 | -5.785e+01 | 0.0000 | 314.0 | 7.90% | 959.8 | 4.18% | motif file (matrix) |
pdf |
| 21 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-24 | -5.633e+01 | 0.0000 | 361.0 | 9.08% | 1170.4 | 5.10% | motif file (matrix) |
pdf |
| 22 |  | TATA-box/SacCer-Promoters/Homer | 1e-24 | -5.527e+01 | 0.0000 | 1718.0 | 43.20% | 8107.6 | 35.35% | motif file (matrix) |
pdf |
| 23 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-23 | -5.390e+01 | 0.0000 | 693.0 | 17.43% | 2738.3 | 11.94% | motif file (matrix) |
pdf |
| 24 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-22 | -5.265e+01 | 0.0000 | 918.0 | 23.08% | 3878.3 | 16.91% | motif file (matrix) |
pdf |
| 25 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-22 | -5.184e+01 | 0.0000 | 691.0 | 17.37% | 2751.7 | 12.00% | motif file (matrix) |
pdf |
| 26 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-21 | -4.931e+01 | 0.0000 | 124.0 | 3.12% | 263.3 | 1.15% | motif file (matrix) |
pdf |
| 27 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-18 | -4.270e+01 | 0.0000 | 1209.0 | 30.40% | 5548.1 | 24.19% | motif file (matrix) |
pdf |
| 28 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-18 | -4.201e+01 | 0.0000 | 481.0 | 12.09% | 1841.8 | 8.03% | motif file (matrix) |
pdf |
| 29 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-17 | -4.010e+01 | 0.0000 | 348.0 | 8.75% | 1238.3 | 5.40% | motif file (matrix) |
pdf |
| 30 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-14 | -3.373e+01 | 0.0000 | 210.0 | 5.28% | 675.2 | 2.94% | motif file (matrix) |
pdf |
| 31 |  | SeqBias: TA-repeat | 1e-14 | -3.298e+01 | 0.0000 | 3506.0 | 88.16% | 19220.4 | 83.79% | motif file (matrix) |
pdf |
| 32 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-14 | -3.229e+01 | 0.0000 | 651.0 | 16.37% | 2800.1 | 12.21% | motif file (matrix) |
pdf |
| 33 |  | SUT1?/SacCer-Promoters/Homer | 1e-14 | -3.225e+01 | 0.0000 | 2586.0 | 65.02% | 13555.5 | 59.10% | motif file (matrix) |
pdf |
| 34 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-13 | -3.143e+01 | 0.0000 | 287.0 | 7.22% | 1036.5 | 4.52% | motif file (matrix) |
pdf |
| 35 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-12 | -2.852e+01 | 0.0000 | 118.0 | 2.97% | 326.2 | 1.42% | motif file (matrix) |
pdf |
| 36 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-12 | -2.812e+01 | 0.0000 | 885.0 | 22.25% | 4084.3 | 17.81% | motif file (matrix) |
pdf |
| 37 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-11 | -2.746e+01 | 0.0000 | 400.0 | 10.06% | 1614.2 | 7.04% | motif file (matrix) |
pdf |
| 38 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-11 | -2.599e+01 | 0.0000 | 262.0 | 6.59% | 972.4 | 4.24% | motif file (matrix) |
pdf |
| 39 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-11 | -2.598e+01 | 0.0000 | 134.0 | 3.37% | 405.2 | 1.77% | motif file (matrix) |
pdf |
| 40 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-10 | -2.489e+01 | 0.0000 | 250.0 | 6.29% | 927.5 | 4.04% | motif file (matrix) |
pdf |
| 41 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-10 | -2.426e+01 | 0.0000 | 135.0 | 3.39% | 420.4 | 1.83% | motif file (matrix) |
pdf |
| 42 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-10 | -2.421e+01 | 0.0000 | 268.0 | 6.74% | 1018.1 | 4.44% | motif file (matrix) |
pdf |
| 43 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-9 | -2.167e+01 | 0.0000 | 434.0 | 10.91% | 1861.3 | 8.11% | motif file (matrix) |
pdf |
| 44 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-8 | -2.026e+01 | 0.0000 | 94.0 | 2.36% | 275.9 | 1.20% | motif file (matrix) |
pdf |
| 45 |  | CRE(bZIP)/Promoter/Homer | 1e-8 | -2.025e+01 | 0.0000 | 182.0 | 4.58% | 658.4 | 2.87% | motif file (matrix) |
pdf |
| 46 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-8 | -1.974e+01 | 0.0000 | 1374.0 | 34.55% | 6935.8 | 30.24% | motif file (matrix) |
pdf |
| 47 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-8 | -1.937e+01 | 0.0000 | 405.0 | 10.18% | 1750.4 | 7.63% | motif file (matrix) |
pdf |
| 48 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.800e+01 | 0.0000 | 1212.0 | 30.48% | 6085.1 | 26.53% | motif file (matrix) |
pdf |
| 49 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-7 | -1.640e+01 | 0.0000 | 598.0 | 15.04% | 2802.3 | 12.22% | motif file (matrix) |
pdf |
| 50 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-6 | -1.509e+01 | 0.0000 | 166.0 | 4.17% | 635.4 | 2.77% | motif file (matrix) |
pdf |
| 51 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-6 | -1.482e+01 | 0.0000 | 117.0 | 2.94% | 412.1 | 1.80% | motif file (matrix) |
pdf |
| 52 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-6 | -1.453e+01 | 0.0000 | 114.0 | 2.87% | 401.2 | 1.75% | motif file (matrix) |
pdf |
| 53 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.351e+01 | 0.0000 | 860.0 | 21.62% | 4280.2 | 18.66% | motif file (matrix) |
pdf |
| 54 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.223e+01 | 0.0000 | 479.0 | 12.04% | 2266.5 | 9.88% | motif file (matrix) |
pdf |
| 55 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.220e+01 | 0.0000 | 46.0 | 1.16% | 127.8 | 0.56% | motif file (matrix) |
pdf |
| 56 |  | TATA-box/Drosophila-Promoters/Homer | 1e-5 | -1.156e+01 | 0.0001 | 188.0 | 4.73% | 784.2 | 3.42% | motif file (matrix) |
pdf |
| 57 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.155e+01 | 0.0001 | 39.0 | 0.98% | 103.5 | 0.45% | motif file (matrix) |
pdf |
| 58 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-4 | -1.105e+01 | 0.0001 | 111.0 | 2.79% | 420.8 | 1.83% | motif file (matrix) |
pdf |
| 59 |  | NRF(NRF)/Promoter/Homer | 1e-4 | -1.092e+01 | 0.0001 | 79.0 | 1.99% | 275.7 | 1.20% | motif file (matrix) |
pdf |
| 60 |  | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-4 | -1.012e+01 | 0.0003 | 101.0 | 2.54% | 383.2 | 1.67% | motif file (matrix) |
pdf |
| 61 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -9.966e+00 | 0.0003 | 37.0 | 0.93% | 103.5 | 0.45% | motif file (matrix) |
pdf |
| 62 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.948e+00 | 0.0003 | 700.0 | 17.60% | 3514.4 | 15.32% | motif file (matrix) |
pdf |
| 63 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-4 | -9.869e+00 | 0.0003 | 177.0 | 4.45% | 754.3 | 3.29% | motif file (matrix) |
pdf |
| 64 |  | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-4 | -9.525e+00 | 0.0004 | 414.0 | 10.41% | 1986.1 | 8.66% | motif file (matrix) |
pdf |
| 65 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-3 | -9.170e+00 | 0.0006 | 427.0 | 10.74% | 2064.2 | 9.00% | motif file (matrix) |
pdf |
| 66 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-3 | -8.287e+00 | 0.0015 | 1388.0 | 34.90% | 7407.1 | 32.29% | motif file (matrix) |
pdf |
| 67 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-3 | -8.188e+00 | 0.0016 | 58.0 | 1.46% | 204.8 | 0.89% | motif file (matrix) |
pdf |
| 68 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-3 | -8.188e+00 | 0.0016 | 58.0 | 1.46% | 204.8 | 0.89% | motif file (matrix) |
pdf |
| 69 |  | IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer | 1e-3 | -7.950e+00 | 0.0020 | 207.0 | 5.20% | 938.8 | 4.09% | motif file (matrix) |
pdf |
| 70 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-3 | -7.891e+00 | 0.0021 | 38.0 | 0.96% | 119.0 | 0.52% | motif file (matrix) |
pdf |
| 71 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -7.511e+00 | 0.0030 | 628.0 | 15.79% | 3201.6 | 13.96% | motif file (matrix) |
pdf |
| 72 |  | NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer | 1e-3 | -7.263e+00 | 0.0038 | 33.0 | 0.83% | 102.5 | 0.45% | motif file (matrix) |
pdf |
| 73 |  | ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -6.987e+00 | 0.0049 | 43.0 | 1.08% | 147.2 | 0.64% | motif file (matrix) |
pdf |
| 74 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-2 | -6.806e+00 | 0.0058 | 171.0 | 4.30% | 775.8 | 3.38% | motif file (matrix) |
pdf |
| 75 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.758e+00 | 0.0060 | 222.0 | 5.58% | 1040.3 | 4.54% | motif file (matrix) |
pdf |
| 76 |  | NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -6.462e+00 | 0.0080 | 55.0 | 1.38% | 206.4 | 0.90% | motif file (matrix) |
pdf |
| 77 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.427e+00 | 0.0081 | 493.0 | 12.40% | 2501.9 | 10.91% | motif file (matrix) |
pdf |
| 78 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-2 | -6.340e+00 | 0.0088 | 62.0 | 1.56% | 240.3 | 1.05% | motif file (matrix) |
pdf |
| 79 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -6.131e+00 | 0.0106 | 321.0 | 8.07% | 1580.2 | 6.89% | motif file (matrix) |
pdf |
| 80 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.043e+00 | 0.0115 | 1077.0 | 27.08% | 5760.2 | 25.11% | motif file (matrix) |
pdf |
| 81 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.029e+00 | 0.0115 | 150.0 | 3.77% | 682.0 | 2.97% | motif file (matrix) |
pdf |
| 82 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.733e+00 | 0.0153 | 66.0 | 1.66% | 266.3 | 1.16% | motif file (matrix) |
pdf |
| 83 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.677e+00 | 0.0160 | 129.0 | 3.24% | 581.1 | 2.53% | motif file (matrix) |
pdf |
| 84 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.649e+00 | 0.0162 | 84.0 | 2.11% | 355.6 | 1.55% | motif file (matrix) |
pdf |
| 85 |  | ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.497e+00 | 0.0187 | 97.0 | 2.44% | 422.7 | 1.84% | motif file (matrix) |
pdf |
| 86 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -5.349e+00 | 0.0214 | 403.0 | 10.13% | 2048.4 | 8.93% | motif file (matrix) |
pdf |
| 87 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.310e+00 | 0.0220 | 207.0 | 5.20% | 995.5 | 4.34% | motif file (matrix) |
pdf |
| 88 |  | ETS(ETS)/Promoter/Homer | 1e-2 | -5.306e+00 | 0.0220 | 266.0 | 6.69% | 1309.0 | 5.71% | motif file (matrix) |
pdf |
| 89 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -5.223e+00 | 0.0235 | 27.0 | 0.68% | 90.1 | 0.39% | motif file (matrix) |
pdf |
| 90 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.049e+00 | 0.0276 | 146.0 | 3.67% | 681.4 | 2.97% | motif file (matrix) |
pdf |
| 91 |  | PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.896e+00 | 0.0318 | 63.0 | 1.58% | 262.6 | 1.14% | motif file (matrix) |
pdf |
| 92 |  | Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -4.758e+00 | 0.0361 | 263.0 | 6.61% | 1309.2 | 5.71% | motif file (matrix) |
pdf |