# Parameters
data_name = "Sox21"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:35:38,938 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Sox21: Motif: M00208_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox21: #3

Cell type	Modisco	Homer
ES;E14;A;CL	Pattern: metacluster_1/pattern_3 Significance: 0.0404267	Pattern: motif7.motif Significance: 0.00215591
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.00674688	Pattern: motif9.motif Significance: 0.0141053
ES;ZhBTc4;2;D;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.018394099999999997	Pattern: motif7.motif Significance: 0.0562095

Unique Cell types only TF-MoDISco finds Sox21: #15

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_18 Significance: 0.0343731	Absent
ES;D0;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.0148077	Absent
KDNY;P0;D;En	Pattern: metacluster_1/pattern_7 Significance: 0.0366013	Absent
ES;J1;A;CL	Pattern: metacluster_1/pattern_4 Significance: 0.016590900000000002	Absent
ES;F1216;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.019726900000000002	Absent
ES;129SV_Jae_C57BL6J;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.00796689	Absent
ES;v6.5;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.0520362	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.025123	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.0524472	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0243761	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.05626180000000001	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.0101228	Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO	Pattern: metacluster_1/pattern_11 Significance: 0.0157993	Absent
ES;JM8.N4;Asynch;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.037085	Absent
ES;JM8.N4;Mitosis;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.035513199999999995	Absent

No Cell types only Homer finds Sox21