In [1]:
# Parameters
data_name = "Sox11"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:35:23,442 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Sox11: Motif: M00210_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox11: #3

Cell typeModiscoHomer
ES;E14;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0151101

Pattern: motif7.motif

Significance: 0.00484302

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00470708

Pattern: motif9.motif

Significance: 0.0066316000000000005

ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0214261

Pattern: motif7.motif

Significance: 0.0219407

Unique Cell types only TF-MoDISco finds Sox11: #19

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.017935800000000002

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0175708

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.028993900000000003

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0178759

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0326416

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.007015

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.052136699999999994

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00854717

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0104368

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0299642

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0179114

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0456828

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.0524472

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0149608

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.023416299999999998

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0132011

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0202625

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.019904599999999998

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0573231

Absent
Unique Cell types only Homer finds Sox11: #1

Cell typeModiscoHomer
npES;posterior_delC;E8.5;A;GEOAbsent

Pattern: motif4.motif

Significance: 0.0504328