In [1]:
# Parameters
data_name = "Msx3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:20:39,909 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Msx3: Motif: M03256_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Msx3: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00654237

Pattern: motif4.motif

Significance: 0.0170167

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00640907

Pattern: motif5.motif

Significance: 0.0579026

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0068619

Pattern: motif3.motif

Significance: 0.0121487

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.032775599999999995

Pattern: motif14.motif

Significance: 0.047305

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0569952

Pattern: motif13.motif

Significance: 0.0186423

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0245026

Pattern: motif16.motif

Significance: 0.0174083

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0255195

Pattern: motif9.motif

Significance: 0.017569400000000002

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.052355200000000005

Pattern: motif3.motif

Significance: 0.00637937

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0503588

Pattern: motif3.motif

Significance: 0.0209787

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.044377099999999996

Pattern: motif13.motif

Significance: 0.0258408

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0221164

Pattern: motif2.motif

Significance: 0.00571133

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.011698100000000001

Pattern: motif6.motif

Significance: 0.0105419

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0519856

Pattern: motif2.motif

Significance: 0.00546664

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0456161

Pattern: motif3.motif

Significance: 0.00585722

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00780038

Pattern: motif4.motif

Significance: 0.0145689

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.017313

Pattern: motif2.motif

Significance: 0.00518609

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0373825

Pattern: motif10.motif

Significance: 0.0165168

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.011473700000000002

Pattern: motif3.motif

Significance: 0.024415

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0506591

Pattern: motif6.motif

Significance: 0.014389500000000001

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0487132

Pattern: motif14.motif

Significance: 0.0148226

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.012924600000000001

Pattern: motif2.motif

Significance: 0.00576741

Unique Cell types only TF-MoDISco finds Msx3: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.048146499999999995

/

Pattern: metacluster_0/pattern_25

Significance: 0.041044599999999994

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.019940400000000004

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0505839

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.029876

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0526962

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00265704

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399621

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.058594799999999995

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0293974

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0425027

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.041688499999999996

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.033016199999999996

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0129269

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00668126

Absent
Unique Cell types only Homer finds Msx3: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0472995

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.05028130000000001

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0394772

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.0552389

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0242101

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0130994