In [1]:
# Parameters
data_name = "Msx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:20:38,552 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Msx2: Motif: M00414_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Msx2: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00383336

Pattern: motif4.motif

Significance: 0.0164263

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00280011

Pattern: motif3.motif

Significance: 0.00535344

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.047305

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.014662

Pattern: motif3.motif

Significance: 0.0216013

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00785302

Pattern: motif9.motif

Significance: 0.00585749

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0486906

Pattern: motif3.motif

Significance: 0.00365828

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00987157

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00492496

Pattern: motif2.motif

Significance: 0.00519186

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00416039

Pattern: motif3.motif

Significance: 0.00523812

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.050535000000000004

Pattern: motif3.motif

Significance: 0.0116849

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0168525

Pattern: motif13.motif

Significance: 0.00847391

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00818556

Pattern: motif4.motif

Significance: 0.00410189

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00513543

Pattern: motif2.motif

Significance: 0.00557815

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00533169

Pattern: motif2.motif

Significance: 0.00482473

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0244914

Pattern: motif10.motif

Significance: 0.0156909

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0487132

Pattern: motif14.motif

Significance: 0.014126

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.047327999999999995

Pattern: motif13.motif

Significance: 0.014586700000000001

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.008165100000000002

Pattern: motif6.motif

Significance: 0.0132139

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.044488099999999996

Pattern: motif16.motif

Significance: 0.0150715

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00444484

Pattern: motif2.motif

Significance: 0.00621698

Unique Cell types only TF-MoDISco finds Msx2: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00285935

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.031799799999999996

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00231597

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0567312

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0029624000000000004

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00247421

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399621

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.058594799999999995

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0505859

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0405109

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.014897299999999999

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0374071

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.033016199999999996

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.013842600000000002

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00938677

Absent
Unique Cell types only Homer finds Msx2: #4

Cell typeModiscoHomer
NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0394772

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.012446899999999999

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0230635

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0119814