# Parameters
data_name = "Grhl2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:46,218 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Cell type	Modisco	Homer
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_9 Significance: 9.513710000000002e-08	Pattern: motif5.motif Significance: 0.0318745
Adipose;D;En	Pattern: metacluster_0/pattern_9 Significance: 1.7021700000000002e-06	Pattern: motif6.motif Significance: 5.56422e-09
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_16 Significance: 5.84232e-08	Pattern: motif13.motif Significance: 0.00262881
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 1.95598e-07	Pattern: motif4.motif Significance: 0.000268435

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_17 Significance: 4.643809999999999e-06	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_20 Significance: 0.000522575	Absent
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_17 Significance: 8.75635e-06	Absent
STMCH;P0;D;En	Pattern: metacluster_1/pattern_12 Significance: 2.83613e-06	Absent
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_22 Significance: 0.00223022	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 0.0535294 / Pattern: metacluster_0/pattern_25 Significance: 6.59842e-05	Absent
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_15 Significance: 1.01979e-05	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_20 Significance: 0.00215581	Absent
LNG;A;CL	Pattern: metacluster_1/pattern_26 Significance: 8.12907e-05	Absent
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_19 Significance: 3.8354199999999994e-06	Absent
npES;ZHBTC4;doxyc;treat;A;GEO	Pattern: metacluster_0/pattern_23 Significance: 0.00373279	Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO	Pattern: metacluster_1/pattern_17 Significance: 0.00023013900000000003	Absent
ES;JM8.N4;Asynch;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.00018324900000000002	Absent
Mammary;A;CL	Pattern: metacluster_0/pattern_13 Significance: 7.224239999999999e-05	Absent
ES;JM8.N4;Mitosis;A;GEO	Pattern: metacluster_0/pattern_26 Significance: 0.0008789739999999999	Absent
placenta;A;CL	Pattern: metacluster_0/pattern_15 Significance: 7.939299999999999e-06	Absent
STMCH;A;CL	Pattern: metacluster_1/pattern_19 Significance: 9.90268e-05	Absent
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.000421237	Absent
ES;E14;D;En	Pattern: metacluster_1/pattern_27 Significance: 0.0249243	Absent
ES;C57BL_6J;R1;D;En	Pattern: metacluster_1/pattern_21 Significance: 0.0028166	Absent
KDNY;8wks;D;En	Pattern: metacluster_1/pattern_21 Significance: 0.00161975	Absent
ES;J1;A;CL	Pattern: metacluster_1/pattern_19 Significance: 0.000554512	Absent
ES;E14;A;GEO	Pattern: metacluster_0/pattern_23 Significance: 0.00150593	Absent
ES;F1216;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.000669125	Absent
LNG;8wks;D;En	Pattern: metacluster_0/pattern_18 Significance: 5.569250000000001e-07	Absent
ES;v6.5;A;GEO	Pattern: metacluster_1/pattern_20 Significance: 0.019375	Absent
LNG;P0;D;En	Pattern: metacluster_1/pattern_20 Significance: 1.9664800000000002e-05	Absent
wES;LNG;E14.5;D;En	Pattern: metacluster_1/pattern_22 Significance: 0.00028819	Absent