In [1]:
# Parameters
data_name = "Foxd1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:22,679 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxd1: Motif: M10570_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxd1: #8

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.023020500000000003

/

Pattern: metacluster_0/pattern_14

Significance: 0.000533874

Pattern: motif3.motif

Significance: 0.0502769

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.010314700000000001

/

Pattern: metacluster_0/pattern_13

Significance: 1.13054e-05

/

Pattern: metacluster_0/pattern_14

Significance: 0.0588259

Pattern: motif7.motif

Significance: 6.9306e-05

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000388284

Pattern: motif5.motif

Significance: 0.00413002

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 7.36114e-05

Pattern: motif5.motif

Significance: 0.000470279

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0278439

/

Pattern: metacluster_0/pattern_10

Significance: 0.000544313

Pattern: motif15.motif

Significance: 0.00700994

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 1.0259100000000001e-05

/

Pattern: metacluster_1/pattern_10

Significance: 0.010412000000000001

Pattern: motif3.motif

Significance: 7.83526e-05

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 5.6358000000000005e-05

Pattern: motif6.motif

Significance: 0.0208039

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 1.15567e-05

Pattern: motif5.motif

Significance: 0.000403443

/

Pattern: motif9.motif

Significance: 0.029236500000000002

Unique Cell types only TF-MoDISco finds Foxd1: #39

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00046506900000000003

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0449374

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0435134

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000416911

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.0260135

/

Pattern: metacluster_0/pattern_12

Significance: 0.00264999

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.020394299999999997

/

Pattern: metacluster_0/pattern_13

Significance: 0.000797072

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.035622

/

Pattern: metacluster_0/pattern_10

Significance: 0.0010812999999999999

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.023253700000000002

/

Pattern: metacluster_1/pattern_16

Significance: 0.00109939

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.019386900000000002

/

Pattern: metacluster_0/pattern_13

Significance: 0.000709543

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.040869499999999996

/

Pattern: metacluster_0/pattern_12

Significance: 0.000937699

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0506894

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0230712

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.044145300000000005

/

Pattern: metacluster_0/pattern_23

Significance: 0.000521592

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0408737

/

Pattern: metacluster_0/pattern_13

Significance: 0.000191954

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0007571689999999999

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00581892

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0253456

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.026622399999999997

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.00021746799999999999

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 2.46688e-05

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.00681241

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00112604

Absent
STMCH;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0535923

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.0297772

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 3.1742e-06

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00390536

/

Pattern: metacluster_1/pattern_21

Significance: 0.040026

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00248067

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.00250892

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 3.1420299999999997e-06

/

Pattern: metacluster_1/pattern_18

Significance: 0.00881725

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 9.08344e-05

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.000207979

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0148922

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.043492

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.00112857

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.05992190000000001

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0499993

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0387134

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0484336

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0480531

Absent
Unique Cell types only Homer finds Foxd1: #1

Cell typeModiscoHomer
NPC;F129;A;GEOAbsent

Pattern: motif14.motif

Significance: 0.029741700000000003