Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Ct_1_S22_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4349
Total background sequences = 21756
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-226	-5.215e+02	27.36%	10.04%	300.4bp (198.8bp)	REB1(MacIsaac)/Yeast(0.991) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-112	-2.581e+02	40.19%	24.63%	325.2bp (195.2bp)	PB0192.1_Tcfap2e_2/Jaspar(0.902) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-70	-1.624e+02	26.01%	15.48%	342.7bp (232.9bp)	RSC30/MA0375.1/Jaspar(0.881) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-43	-9.916e+01	39.55%	29.70%	314.6bp (199.0bp)	TATA-box/SacCer-Promoters/Homer(0.887) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-40	-9.274e+01	4.81%	1.64%	308.8bp (230.6bp)	IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer(0.942) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-33	-7.715e+01	21.29%	14.44%	321.8bp (212.2bp)	RDS1/MA0361.1/Jaspar(0.858) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-33	-7.606e+01	8.39%	4.23%	321.4bp (223.2bp)	SeqBias: CA-repeat(0.872) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-29	-6.680e+01	7.47%	3.79%	353.3bp (183.8bp)	TOD6?/SacCer-Promoters/Homer(0.945) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-29	-6.678e+01	16.46%	10.80%	337.4bp (196.9bp)	ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer(0.792) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-25	-5.796e+01	11.38%	6.99%	327.1bp (197.0bp)	PB0044.1_Mtf1_1/Jaspar(0.718) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-25	-5.795e+01	6.85%	3.55%	339.2bp (189.9bp)	RPH1/Literature(Harbison)/Yeast(0.718) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-20	-4.807e+01	9.17%	5.58%	262.5bp (195.1bp)	RAP1/MA0359.1/Jaspar(0.861) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-17	-4.059e+01	20.81%	15.82%	337.7bp (192.6bp)	STP4/MA0397.1/Jaspar(0.715) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-15	-3.606e+01	15.41%	11.31%	308.6bp (187.0bp)	NAC083/MA1043.1/Jaspar(0.724) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-15	-3.507e+01	2.02%	0.75%	262.4bp (166.5bp)	ZAP1(WRKY(Zn))/Arabidopsis thaliana/AthaMap(0.748) More Information \| Similar Motifs Found	motif file (matrix)