Information for 16-CGCCTTAA (Motif 11)


Reverse Opposite:

p-value:1e-25
log p-value:-5.795e+01
Information Content per bp:1.892
Number of Target Sequences with motif298.0
Percentage of Target Sequences with motif6.85%
Number of Background Sequences with motif772.5
Percentage of Background Sequences with motif3.55%
Average Position of motif in Targets423.8 +/- 339.2bp
Average Position of motif in Background274.4 +/- 189.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPH1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

RPH1(MacIsaac)/Yeast

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCTTAA
NNGGCCACGCCTTTN

PROX1/MA0794.1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CGCCTTAA
CAAGACGCCTTA-

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGCCTTAA
GTCCGCCATTA

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CGCCTTAA-
NTCGCGCGCCTTNNN

MSN4(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTTAA
CCCCCTT--

RPH1/MA0372.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCCTTAA
ACCCCTAA-

Abd-B/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGCCTTAA----
NNNGCCATAAANGN

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CGCCTTAA-
ANCGCGCGCCCTTNN