In [1]:
# Parameters
data_name = "Ppara"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:29:33,373 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Ppara: Motif: M09314_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Ppara: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00403005

Pattern: motif17.motif

Significance: 3.04144e-06

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.05765750000000001

/

Pattern: metacluster_0/pattern_17

Significance: 8.17767e-05

Pattern: motif18.motif

Significance: 7.85659e-06

LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 6.54698e-06

Pattern: motif2.motif

Significance: 0.000237171

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.00019729

Pattern: motif3.motif

Significance: 0.0026854

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 5.4960699999999994e-14

Pattern: motif10.motif

Significance: 3.4526099999999996e-06

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 5.209199999999999e-06

Pattern: motif1.motif

Significance: 0.00020666

RTN;D1;D;En

Pattern: metacluster_0/pattern_10

Significance: 0.000232332

Pattern: motif8.motif

Significance: 0.00647282

iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.0128224

Pattern: motif10.motif

Significance: 0.0246046

ILC3_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00630573

Pattern: motif8.motif

Significance: 0.0378369

NCR+ILC3;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00363023

Pattern: motif5.motif

Significance: 0.0130879

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0340601

Pattern: motif19.motif

Significance: 1.35679e-05

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 4.4096499999999994e-05

Pattern: motif5.motif

Significance: 0.00626326

LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_1

Significance: 0.000120716

Pattern: motif2.motif

Significance: 0.0060986999999999994

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 2.4600099999999996e-06

Pattern: motif12.motif

Significance: 2.9134899999999998e-05

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0194509

/

Pattern: metacluster_0/pattern_17

Significance: 0.000106745

Pattern: motif20.motif

Significance: 2.56178e-05

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0473823

/

Pattern: metacluster_0/pattern_16

Significance: 5.80695e-05

Pattern: motif15.motif

Significance: 0.03524

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 6.54568e-06

Pattern: motif2.motif

Significance: 0.000272266

Unique Cell types only TF-MoDISco finds Ppara: #29

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00322534

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0586669

/

Pattern: metacluster_0/pattern_23

Significance: 8.21592e-05

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.020685299999999997

Absent
STMCH;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.021290299999999998

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.053231600000000004

/

Pattern: metacluster_0/pattern_17

Significance: 0.000130809

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.043365100000000004

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0243348

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00328735

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00119958

/

Pattern: metacluster_0/pattern_15

Significance: 8.42697e-05

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.040382

/

Pattern: metacluster_0/pattern_24

Significance: 0.000141071

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.000158489

/

Pattern: metacluster_0/pattern_21

Significance: 0.00010845

Absent
CD4+CD8-TCR+CD25-Foxp3+;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.024608500000000002

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.017205200000000004

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0193518

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.00323085

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.0378403

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0197017

Absent
NCR+ILC3+IL23;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.00447479

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0156078

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.038343

Absent
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_15

Significance: 2.3087900000000004e-06

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0303551

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.000324893

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.0479565

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00916189

Absent
ILC1;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0171988

Absent
ILC3;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00630641

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00366704

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.0256452

Absent
Unique Cell types only Homer finds Ppara: #2

Cell typeModiscoHomer
DC_BMD;A;CLAbsent

Pattern: motif13.motif

Significance: 0.026607799999999997

wES;RTN;E11.5;D;EnAbsent

Pattern: motif21.motif

Significance: 0.042945