In [1]:
# Parameters
data_name = "Nr1h3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:25:06,779 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nr1h3: Motif: M09301_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nr1h3: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00369894

Pattern: motif17.motif

Significance: 8.81892e-06

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0104665

/

Pattern: metacluster_0/pattern_17

Significance: 1.32143e-05

Pattern: motif18.motif

Significance: 3.66729e-05

LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 2.0151299999999999e-07

Pattern: motif2.motif

Significance: 1.77379e-07

wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00141812

/

Pattern: metacluster_0/pattern_15

Significance: 3.40825e-05

Pattern: motif9.motif

Significance: 0.033951

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_2

Significance: 6.706280000000001e-06

Pattern: motif3.motif

Significance: 3.55684e-05

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00114484

Pattern: motif10.motif

Significance: 3.4526099999999996e-06

STMCH;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.000961622

Pattern: motif11.motif

Significance: 0.004155699999999999

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 2.1662400000000002e-07

Pattern: motif1.motif

Significance: 8.3009e-07

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.00495356

Pattern: motif19.motif

Significance: 3.85842e-05

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 1.30299e-06

Pattern: motif5.motif

Significance: 0.000171224

LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_1

Significance: 5.0999300000000005e-06

Pattern: motif2.motif

Significance: 0.00044097699999999995

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 1.68194e-05

Pattern: motif12.motif

Significance: 8.05738e-05

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.00248308

/

Pattern: metacluster_0/pattern_17

Significance: 1.02952e-05

Pattern: motif20.motif

Significance: 4.85399e-05

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00793318

/

Pattern: metacluster_0/pattern_16

Significance: 1.92082e-05

Pattern: motif15.motif

Significance: 0.0390329

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 5.0402599999999996e-08

Pattern: motif2.motif

Significance: 4.39211e-07

Unique Cell types only TF-MoDISco finds Nr1h3: #23

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.008407600000000001

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0118507

/

Pattern: metacluster_0/pattern_23

Significance: 1.46919e-05

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0261007

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.058606500000000006

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00693129

/

Pattern: metacluster_0/pattern_17

Significance: 1.31554e-05

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0431902

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.013730100000000002

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00841727

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00308036

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0326802

/

Pattern: metacluster_0/pattern_24

Significance: 2.31095e-06

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00947147

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 4.3532400000000004e-08

/

Pattern: metacluster_0/pattern_21

Significance: 6.85156e-06

Absent
CD4+CD8-TCR+CD25-Foxp3+;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.017518799999999998

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00117117

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.00795877

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.050860300000000004

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0296502

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.0219002

Absent
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_15

Significance: 3.89831e-07

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.034134899999999996

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 1.04093e-05

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.015126599999999999

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00877288

Absent
Unique Cell types only Homer finds Nr1h3: #1

Cell typeModiscoHomer
DC_BMD;A;CLAbsent

Pattern: motif13.motif

Significance: 0.0217018