In [1]:
# Parameters
data_name = "Hoxd1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:27,961 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxd1: Motif: M00492_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxd1: #19

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00364463

Pattern: motif4.motif

Significance: 0.011156000000000001

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00286922

Pattern: motif5.motif

Significance: 0.0579026

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00210271

Pattern: motif3.motif

Significance: 0.00274594

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.047305

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.008203100000000001

Pattern: motif3.motif

Significance: 0.013723599999999999

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00943854

Pattern: motif9.motif

Significance: 0.00585749

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00762847

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00474508

Pattern: motif2.motif

Significance: 0.00435275

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00362901

Pattern: motif3.motif

Significance: 0.00386752

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.010014700000000001

Pattern: motif13.motif

Significance: 0.00847391

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00706318

Pattern: motif4.motif

Significance: 0.00410189

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00574045

Pattern: motif2.motif

Significance: 0.00394141

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00556587

Pattern: motif2.motif

Significance: 0.00366279

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.021721400000000002

Pattern: motif10.motif

Significance: 0.015903200000000003

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.033210699999999996

Pattern: motif14.motif

Significance: 0.0109696

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.038937599999999996

Pattern: motif13.motif

Significance: 0.014377700000000002

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00659998

Pattern: motif6.motif

Significance: 0.0132139

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0314881

Pattern: motif16.motif

Significance: 0.0150715

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0049902

Pattern: motif2.motif

Significance: 0.00330322

Unique Cell types only TF-MoDISco finds Hoxd1: #13

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00320028

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0119163

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.048333999999999995

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00354486

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0502854

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00203961

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0507828

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.052448699999999994

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0262433

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00955633

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0573293

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00854929

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00710893

Absent
Unique Cell types only Homer finds Hoxd1: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.032202999999999996

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0121059

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0409827

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.012755599999999999

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0121985

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.012446899999999999