In [1]:
# Parameters
data_name = "Gsx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:49,998 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Gsx2: Motif: M00469_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gsx2: #19

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000359289

Pattern: motif4.motif

Significance: 0.0493083

/

Pattern: motif8.motif

Significance: 0.032897699999999995

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 3.8284499999999996e-05

Pattern: motif3.motif

Significance: 0.029958999999999996

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0316916

Pattern: motif14.motif

Significance: 0.047305

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0040579

Pattern: motif3.motif

Significance: 0.0151553

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00320463

Pattern: motif9.motif

Significance: 0.00616326

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.004598

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00154164

Pattern: motif2.motif

Significance: 0.00313465

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00133764

Pattern: motif3.motif

Significance: 0.00299396

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.035117699999999995

Pattern: motif3.motif

Significance: 0.012755599999999999

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00200704

Pattern: motif13.motif

Significance: 0.00847391

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0025138

Pattern: motif4.motif

Significance: 0.0061121000000000005

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00161743

Pattern: motif2.motif

Significance: 0.00282453

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00262334

Pattern: motif2.motif

Significance: 0.00219444

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.027206099999999997

Pattern: motif10.motif

Significance: 0.0136471

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.00526512

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.017357400000000002

Pattern: motif13.motif

Significance: 0.0093836

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00277136

Pattern: motif6.motif

Significance: 0.0130058

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0340719

Pattern: motif16.motif

Significance: 0.0106046

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00157647

Pattern: motif2.motif

Significance: 0.00301347

Unique Cell types only TF-MoDISco finds Gsx2: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00577193

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0180115

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 8.08942e-05

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0295186

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00347908

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.051319000000000004

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 1.0312600000000001e-06

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.030195099999999996

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0428084

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0168565

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0015555999999999999

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00671811

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0590965

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05354640000000001

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00270223

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00420043

Absent
Unique Cell types only Homer finds Gsx2: #7

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0498961

LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.031741700000000005

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0409827

SML_INTSTN;A;CLAbsent

Pattern: motif3.motif

Significance: 0.04049

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.011949

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0091262

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0358894