In [1]:
# Parameters
data_name = "Foxd3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:35,469 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxd3: Motif: M09114_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxd3: #9

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 1.9068599999999999e-06

Pattern: motif9.motif

Significance: 0.0437123

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.022763400000000003

/

Pattern: metacluster_0/pattern_13

Significance: 2.87414e-05

/

Pattern: metacluster_0/pattern_14

Significance: 0.047877699999999995

Pattern: motif7.motif

Significance: 0.019706900000000003

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 3.78292e-06

Pattern: motif16.motif

Significance: 0.055944600000000004

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.000242533

Pattern: motif5.motif

Significance: 0.00042410699999999996

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 4.03296e-06

Pattern: motif15.motif

Significance: 0.00144975

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 1.3983199999999999e-05

Pattern: motif3.motif

Significance: 8.25326e-05

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 1.10781e-06

Pattern: motif4.motif

Significance: 0.00129786

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 1.03839e-05

Pattern: motif6.motif

Significance: 0.0273186

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 2.04129e-05

Pattern: motif5.motif

Significance: 2.0492399999999997e-05

Unique Cell types only TF-MoDISco finds Foxd3: #24

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 1.30799e-05

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00026237200000000003

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 4.80324e-05

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 5.83297e-06

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 3.21685e-06

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 3.49428e-09

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 4.45471e-07

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 2.8185599999999997e-06

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 4.16548e-06

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 1.38493e-07

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.000121681

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000648422

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.014471000000000001

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 1.77714e-05

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 4.74709e-05

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.0180733

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.0102216

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.000422216

/

Pattern: metacluster_1/pattern_21

Significance: 0.000659875

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.000394605

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.000566859

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00109394

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.000125112

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 1.6840099999999998e-05

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 1.1869700000000001e-05

Absent
Unique Cell types only Homer finds Foxd3: #1

Cell typeModiscoHomer
Md_BRN;D;EnAbsent

Pattern: motif14.motif

Significance: 0.0370069