In [1]:
# Parameters
data_name = "Figla"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:06:33,118 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Figla: Motif: M01737_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Figla: #9

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.048110900000000005

Pattern: motif5.motif

Significance: 0.014899500000000001

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0189738

Pattern: motif18.motif

Significance: 0.0157645

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0544121

Pattern: motif13.motif

Significance: 0.0310685

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00531091

Pattern: motif15.motif

Significance: 0.0241832

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.05196619999999999

Pattern: motif2.motif

Significance: 0.05137630000000001

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0540564

Pattern: motif16.motif

Significance: 0.05953580000000001

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00297638

Pattern: motif9.motif

Significance: 0.037570599999999996

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.010160700000000002

Pattern: motif9.motif

Significance: 0.0347623

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0126714

Pattern: motif4.motif

Significance: 0.020612000000000002

Unique Cell types only TF-MoDISco finds Figla: #32

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00775283

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0217041

Absent
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.017353999999999998

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.025961

Absent
prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.040053500000000006

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0215357

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.019953099999999998

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.020936700000000003

Absent
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.025838599999999996

Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.030724

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0129382

/

Pattern: metacluster_0/pattern_22

Significance: 0.0369166

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0452741

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00712343

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0105766

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.007292900000000001

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00459236

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.006326300000000001

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0511216

Absent
DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0274158

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0521827

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0584061

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.014893

Absent
Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00815318

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0296851

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0156661

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.00768617

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0142942

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0389836

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.022137900000000002

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00907555

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.054698300000000005

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.033750800000000004

Absent
Unique Cell types only Homer finds Figla: #4

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.00365058

NPC;F129;A;GEOAbsent

Pattern: motif10.motif

Significance: 0.05376469999999999

B_SPLND;A;GEOAbsent

Pattern: motif21.motif

Significance: 0.0146275

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif7.motif

Significance: 0.054980499999999995