Index of /kundaje/marinovg/oak/various/ENCODE4/Chromatin-nanopores/2025-04-21-NextSeq-run-native-retest

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]z2025-04-22 17:34 2.0K 
[TXT]wigtobigwig-wigplusminus-2x36mers.sh2025-04-22 03:21 4.2K 
[TXT]samtools-index-2x36mers.sh2025-04-22 03:21 2.0K 
[TXT]samtools-index-1x36mers.sh2025-04-22 03:21 1.0K 
[TXT]run_spp.sh2025-04-22 03:21 1.3K 
[TXT]map-2x36mers.sh2025-04-22 03:21 6.0K 
[TXT]map-1x36mers.sh2025-04-22 03:21 5.2K 
[TXT]makewiggle-stranded-2x36mers.sh2025-04-22 03:21 4.6K 
[TXT]macs2.sh2025-04-22 13:18 1.8K 
[TXT]bedRPKMfromBAM.sh2025-04-22 13:18 2.2K 
[ ]all.250421_NB551514_0284_AHW7FKBGYW.fastq.lines2025-04-22 04:47 11  
[TXT]SampleSheet.csv2025-04-22 17:45 1.5K 
[ ]SAMstats_files.tar.gz2025-04-22 15:20 1.8K 
[ ]SAMstats_CseDa01.table2025-04-22 15:13 501  
[ ]SAMstats_CseDa01.files2025-04-22 15:13 497  
[ ]SAMstats_ATAC.unique.table2025-04-22 12:41 710  
[ ]SAMstats_ATAC.unique.dedup.table2025-04-22 12:41 320  
[ ]SAMstats_ATAC.table2025-04-22 12:40 1.2K 
[ ]SAMstats_ATAC.files2025-04-22 03:58 1.5K 
[ ]SAMstats_ATAC.chrM.table2025-04-22 12:41 244  
[ ]SAMstats-2x36mers.unique.table2025-04-22 15:14 702  
[ ]SAMstats-2x36mers.table2025-04-22 14:49 1.3K 
[TXT]SAMstats-2x36mers.sh2025-04-22 03:21 5.0K 
[ ]SAMstats-2x36mers.files2025-04-22 03:21 1.5K 
[ ]SAMstats-2x36mers.dedup.table2025-04-22 15:14 630  
[ ]SAMstats-1x36mers.table2025-04-22 13:24 700  
[TXT]SAMstats-1x36mers.sh2025-04-22 03:21 2.5K 
[ ]SAMstats-1x36mers.files2025-04-22 03:21 744  
[TXT]PEInsertDistFromBAM-2x36mers.sh2025-04-22 03:21 2.2K 
[TXT]MarkDuplicates.sh2025-04-22 03:21 2.9K 
[ ]MACS-region-stats2025-04-22 13:23 648  
[ ]MACS2025-04-22 13:23 491  
[ ]L3782-K562_KLF1_old_RIPA-vs-L3789.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz2025-04-22 13:16 4.9K 
[ ]L3782-K562_KLF1_old_RIPA-vs-L3789.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM.gz2025-04-22 13:19 5.9K 
[ ]L3777-K562_CseDa01_NEB_test_1M_native_5uL.250421_NB551514_0284_AHW7FKBGYW.fastq.lines2025-04-22 04:40 10  
[ ]L3777-K562_CseDa01_NEB_test_1M_native_5uL.250421_NB551514_0284_AHW7FKBGYW.end2.fastq.gz2025-04-22 04:30 2.8G 
[ ]L3777-K562_CseDa01_NEB_test_1M_native_5uL.250421_NB551514_0284_AHW7FKBGYW.end1.fastq.gz2025-04-22 04:30 2.8G 
[ ]L3777-K562_CseDa01_NEB_test_1M_native_5uL.2x38.bwameth.hg38_CHH.bedGraph.bgz.tbi2025-04-22 15:12 1.5M 
[ ]L3777-K562_CseDa01_NEB_test_1M_native_5uL.2x38.bwameth.hg38_CHH.bedGraph.bgz2025-04-22 15:10 2.6G 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3781-K562_XL-SMF_APOBEC_250K_10ul.2x38.bwameth.hg38_CHH2025-04-22 17:58 101K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3780-K562_XL-SMF_APOBEC_250K_5ul.2x38.bwameth.hg38_CHH2025-04-22 18:02 103K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3779-K562_XL-SMF_APOBEC_250K_1ul.2x38.bwameth.hg38_CHH2025-04-22 18:01 101K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3778-K562_XL-SMF_CseDa01_250K_10ul.2x38.bwameth.hg38_CHH2025-04-22 17:58 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3777-K562_CseDa01_NEB_test_1M_native_5uL.2x38.bwameth.hg38_CHH2025-04-22 18:04 100K 
[ ]ChIP.config2025-04-22 03:20 2.5K 
[TXT]ATACTSSscore-ATAC.txt2025-04-22 12:46 498  
[ ]2016-11-16-refFlat.TSS-profile-L3781-K562_XL-SMF_APOBEC_250K_10ul.2x38.bwameth.hg38_CHH2025-04-22 17:34 101K 
[ ]2016-11-16-refFlat.TSS-profile-L3780-K562_XL-SMF_APOBEC_250K_5ul.2x38.bwameth.hg38_CHH2025-04-22 17:12 101K 
[ ]2016-11-16-refFlat.TSS-profile-L3779-K562_XL-SMF_APOBEC_250K_1ul.2x38.bwameth.hg38_CHH2025-04-22 17:08 101K 
[ ]2016-11-16-refFlat.TSS-profile-L3778-K562_XL-SMF_CseDa01_250K_10ul.2x38.bwameth.hg38_CHH2025-04-22 17:05 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3777-K562_CseDa01_NEB_test_1M_native_5uL.2x38.bwameth.hg38_CHH2025-04-22 17:39 98K 
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