python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3788-K562_Input_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3788-K562_Input_old_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize