/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.bam -c L3788-K562_Input_old_RIPA.2x36mers.unique.dedup.bam -n L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.bam -c L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.bam -n L3782-K562_KLF1_old_RIPA-vs-L3789.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.bam -c L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.bam -n L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.bam -c L3788-K562_Input_old_RIPA.2x36mers.unique.dedup.bam -n L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.bam -c L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.bam -n L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.bam -c L3788-K562_Input_old_RIPA.2x36mers.unique.dedup.bam -n L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.bam -c L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.bam -n L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE &