module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3782-K562_KLF1_old_RIPA.2x36mers.unique.bam OUTPUT=L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3783-K562_KLF1_new_RIPA.2x36mers.unique.bam OUTPUT=L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.bam OUTPUT=L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3785-K562_CTCF_old_RIPA.2x36mers.unique.bam OUTPUT=L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.bam OUTPUT=L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3787-K562_CTCF_new_RIPA.2x36mers.unique.bam OUTPUT=L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3788-K562_Input_old_RIPA.2x36mers.unique.bam OUTPUT=L3788-K562_Input_old_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3788-K562_Input_old_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3789-K562_Input_new_RIPA.2x36mers.unique.bam OUTPUT=L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.bam METRICS_FILE=L3789-K562_Input_new_RIPA.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true