python ~/code/bedRPKMfromBAM.py L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py L3782-K562_KLF1_old_RIPA-vs-L3789.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3782-K562_KLF1_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3782-K562_KLF1_old_RIPA-vs-L3789.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3783-K562_KLF1_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3784-K562_H3K27ac_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3785-K562_CTCF_old_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3786-K562_H3K27ac_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3787-K562_CTCF_new_RIPA.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &