In [1]:
# Parameters
data_name = "Noto"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:52,644 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Noto: Motif: M02101_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Noto: #15

Cell typeModiscoHomer
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0477485

Pattern: motif13.motif

Significance: 0.0129012

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0033835000000000002

Pattern: motif9.motif

Significance: 0.00678937

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00437049

Pattern: motif6.motif

Significance: 0.017838200000000002

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0023606

Pattern: motif2.motif

Significance: 0.00389667

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00171063

Pattern: motif3.motif

Significance: 0.00461028

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0322754

Pattern: motif16.motif

Significance: 0.0150715

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00188899

Pattern: motif13.motif

Significance: 0.00897489

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00261376

Pattern: motif4.motif

Significance: 0.00507916

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00251419

Pattern: motif2.motif

Significance: 0.00217944

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00311898

Pattern: motif2.motif

Significance: 0.00143467

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0202416

Pattern: motif10.motif

Significance: 0.0193995

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0567813

/

Pattern: metacluster_0/pattern_8

Significance: 0.0020622

Pattern: motif3.motif

Significance: 0.013281799999999998

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00100653

Pattern: motif6.motif

Significance: 0.0241318

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.00551246

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00255908

Pattern: motif2.motif

Significance: 0.00223525

Unique Cell types only TF-MoDISco finds Noto: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.0177245

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00364463

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00239852

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00171676

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.032775599999999995

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00625932

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.052224099999999996

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0380773

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.056819600000000005

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00308037

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0482801

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0263468

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.03421969999999999

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.058605700000000004

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0110132

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00264238

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00145681

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00354029

Absent
Unique Cell types only Homer finds Noto: #3

Cell typeModiscoHomer
iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0342721

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0130994

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0163198