In [1]:
# Parameters
data_name = "Mnx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:20:34,704 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Mnx1: Motif: M00388_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Mnx1: #17

Cell typeModiscoHomer
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0381465

Pattern: motif13.motif

Significance: 0.022543900000000002

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000637354

Pattern: motif3.motif

Significance: 0.0205166

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00689901

Pattern: motif9.motif

Significance: 0.011190899999999998

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.010446299999999999

Pattern: motif6.motif

Significance: 0.019974900000000004

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0407286

Pattern: motif3.motif

Significance: 0.00637937

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00285987

Pattern: motif2.motif

Significance: 0.00906534

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00232032

Pattern: motif3.motif

Significance: 0.014727

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.022488499999999998

Pattern: motif16.motif

Significance: 0.0255229

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00863124

Pattern: motif13.motif

Significance: 0.0235458

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00495695

Pattern: motif4.motif

Significance: 0.00876252

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00392025

Pattern: motif2.motif

Significance: 0.013830100000000001

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0038116

Pattern: motif2.motif

Significance: 0.013843000000000001

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0530471

Pattern: motif10.motif

Significance: 0.0272056

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00656117

Pattern: motif3.motif

Significance: 0.0545554

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.005985

Pattern: motif6.motif

Significance: 0.020945

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0159836

Pattern: motif14.motif

Significance: 0.026771100000000003

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00356192

Pattern: motif2.motif

Significance: 0.0167338

Unique Cell types only TF-MoDISco finds Mnx1: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00221933

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00246273

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00103346

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.029635200000000004

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0006069080000000001

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 7.07276e-05

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0358473

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0134408

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0126876

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0201468

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0346939

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.025347900000000003

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0184238

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.034845

Absent
Unique Cell types only Homer finds Mnx1: #2

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0175627

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0212922