In [1]:
# Parameters
data_name = "Lhx6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:17:58,855 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Lhx6: Motif: M00434_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Lhx6: #18

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.027608999999999998

Pattern: motif4.motif

Significance: 0.023074200000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.010384000000000001

Pattern: motif3.motif

Significance: 0.0105596

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.020085

Pattern: motif3.motif

Significance: 0.0161112

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0406655

Pattern: motif9.motif

Significance: 0.021100999999999998

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0367737

Pattern: motif6.motif

Significance: 0.017838200000000002

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0153072

Pattern: motif2.motif

Significance: 0.00627578

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0164613

Pattern: motif3.motif

Significance: 0.00585722

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0406069

Pattern: motif3.motif

Significance: 0.04341969999999999

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0378496

Pattern: motif13.motif

Significance: 0.026674700000000003

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0214238

Pattern: motif4.motif

Significance: 0.0336464

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0252043

Pattern: motif2.motif

Significance: 0.00698119

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0315778

Pattern: motif2.motif

Significance: 0.00625884

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0399621

Pattern: motif10.motif

Significance: 0.0193995

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00974531

Pattern: motif14.motif

Significance: 0.017072999999999998

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.017357400000000002

Pattern: motif13.motif

Significance: 0.016939700000000002

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.03447

Pattern: motif6.motif

Significance: 0.014389500000000001

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00667624

Pattern: motif16.motif

Significance: 0.0168836

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.023600299999999998

Pattern: motif2.motif

Significance: 0.00852425

Unique Cell types only TF-MoDISco finds Lhx6: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.026648200000000004

/

Pattern: metacluster_0/pattern_25

Significance: 0.0199182

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0237803

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.012765299999999999

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0116459

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0309658

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.010260700000000001

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00693101

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0501599

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.054088300000000006

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.015596299999999999

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0123869

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.045549099999999995

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0590965

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05144259999999999

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00642658

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0325125

Absent
Unique Cell types only Homer finds Lhx6: #7

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0498961

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.016062299999999998

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.0255532

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.0387827

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.023455700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0132558

Mammary_BptfKO;A;GEOAbsent

Pattern: motif14.motif

Significance: 0.0322126