In [1]:
# Parameters
data_name = "Hey2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:03,966 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hey2: Motif: M01722_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hey2: #4

Cell typeModiscoHomer
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.035233999999999994

Pattern: motif18.motif

Significance: 0.0420829

smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0203317

Pattern: motif13.motif

Significance: 0.0548271

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.051625800000000006

Pattern: motif9.motif

Significance: 0.028992700000000003

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0184766

Pattern: motif17.motif

Significance: 0.039338599999999994

Unique Cell types only TF-MoDISco finds Hey2: #4

Cell typeModiscoHomer
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.041562

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0161828

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.018655

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0170732

Absent
Unique Cell types only Homer finds Hey2: #16

Cell typeModiscoHomer
wES;LVR;E11.5;D.;EnAbsent

Pattern: motif9.motif

Significance: 0.019062400000000004

wES;Fr_lmb;E11.5;D;EnAbsent

Pattern: motif20.motif

Significance: 0.022633

wES;posterior;1;E8.5;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.0146314

ES;F1216;A;GEOAbsent

Pattern: motif19.motif

Significance: 0.014121200000000002

DC;A;EnAbsent

Pattern: motif13.motif

Significance: 0.018036700000000003

Heart;8wks;D;EnAbsent

Pattern: motif8.motif

Significance: 0.034041800000000004

B_SPLND;A;GEOAbsent

Pattern: motif21.motif

Significance: 0.04131

MCRPHG;A;CLAbsent

Pattern: motif6.motif

Significance: 0.0363384

NPC;mE6;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.0599058

LNG;8wks;D;GEOAbsent

Pattern: motif5.motif

Significance: 0.0217689

A20;B-lymphoma;D;EnAbsent

Pattern: motif13.motif

Significance: 0.010257299999999999

ISP;A;CLAbsent

Pattern: motif14.motif

Significance: 0.033411500000000004

DC_LPS;6h;A;GEOAbsent

Pattern: motif12.motif

Significance: 0.0165298

Hnd_BRN;P0;D;EnAbsent

Pattern: motif16.motif

Significance: 0.0130237

Heart;D;EnAbsent

Pattern: motif14.motif

Significance: 0.0154091

npES;3rd_Rhmbmr_delA;E8.5;A;GEOAbsent

Pattern: motif14.motif

Significance: 0.0361348