In [1]:
# Parameters
data_name = "Foxo1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:09:21,579 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxo1: Motif: M09547_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxo1: #12

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.057612300000000005

Pattern: motif9.motif

Significance: 0.051972300000000006

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0198168

Pattern: motif15.motif

Significance: 0.00997554

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.015690700000000002

Pattern: motif16.motif

Significance: 0.00540539

LVR;8wks;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.0325832

Pattern: motif7.motif

Significance: 0.0129065

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.014242900000000001

Pattern: motif5.motif

Significance: 0.0491233

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.049958499999999996

Pattern: motif15.motif

Significance: 0.042084500000000004

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.039006

Pattern: motif11.motif

Significance: 0.0448926

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.025721800000000003

Pattern: motif3.motif

Significance: 0.027855500000000002

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.035632

Pattern: motif16.motif

Significance: 0.0378604

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0196661

Pattern: motif5.motif

Significance: 0.0316173

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.05048830000000001

Pattern: motif15.motif

Significance: 0.00891609

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.059314599999999995

Pattern: motif16.motif

Significance: 0.00942607

Unique Cell types only TF-MoDISco finds Foxo1: #20

Cell typeModiscoHomer
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.008121399999999999

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.05749830000000001

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.0281541

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0432151

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.032867

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.026490100000000003

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.009462100000000001

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.0506707

Absent
prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.045054500000000004

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.022799299999999998

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0241468

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.033952800000000005

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.0422034

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.015718100000000002

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.0162106

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.05722959999999999

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0188351

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.024676499999999997

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0178456

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0535095

Absent
No Cell types only Homer finds Foxo1