# Parameters
data_name = "Foxl2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:09:11,235 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Foxl2: Motif: M09112_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxl2: #6

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.00548311	Pattern: motif9.motif Significance: 0.0547885
LVR;8wks;D;En	Pattern: metacluster_0/pattern_13 Significance: 0.00192257	Pattern: motif7.motif Significance: 0.010921799999999999
LNG;8wks;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.00269848	Pattern: motif5.motif Significance: 0.03560719999999999
LNG;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.000756787	Pattern: motif5.motif Significance: 0.000703403
wES;LNG;E14.5;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.000285318	Pattern: motif11.motif Significance: 0.0255452
STMCH;P0;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00229613	Pattern: motif3.motif Significance: 0.00960096

Unique Cell types only TF-MoDISco finds Foxl2: #25

Cell type	Modisco	Homer
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_23 Significance: 0.00239904	Absent
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0221129	Absent
LVR;8wks;D;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.000969017	Absent
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.00135946	Absent
3134_mammaryADNCRCNM;D;GE	Pattern: metacluster_1/pattern_18 Significance: 0.0112695	Absent
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0027908	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.010949200000000001	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00778485	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00471148	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00137403	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00302051	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.00724672	Absent
KDNY;P0;D;En	Pattern: metacluster_1/pattern_7 Significance: 0.009431700000000001	Absent
KDNY;8wks;D;En	Pattern: metacluster_1/pattern_24 Significance: 0.0085471	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_23 Significance: 0.0008590160000000001	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00524802	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0185115	Absent
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_22 Significance: 0.00624483	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00414342	Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.0139483	Absent
LVR;P0;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.000824081	Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.00168554	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.00608737	Absent
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.0386784	Absent
LNG;A;CL	Pattern: metacluster_1/pattern_7 Significance: 0.0415952	Absent

No Cell types only Homer finds Foxl2