Contents ΒΆ

Browser sessions

TF-MoDisco motif summaries

TF-MoDISco motif clusters

TF-MoDISco motif clusters (motifPiles)

TF-MoDISco motif instance calls

HOMER, MEME, and DiChIPMunk motifs

Convolutional filter motifs

Browser sessions ΒΆ

Linkes to WashU browser sessions which show the following tracks:

  • Predicted and observed profiles
  • Count and profile DeepSHAP importance
  • Count and profile motif hits from the TF-MoDISco hit scorer

Note that due to space concerns, we do not include browser sessions for the multi-task aggregate runs (i.e. motifs across all tasks of a TF).

TF Task index Exp ID Cell type Link
E2F6 Task 0 ENCSR000BLI K562 Browser Link
E2F6 Task 1 ENCSR000EWJ K562 Browser Link
FOXA2 Task 0 ENCSR000BNI HepG2 Browser Link
FOXA2 Task 1 ENCSR066EBK HepG2 Browser Link
FOXA2 Task 2 ENCSR080XEY liver Browser Link
FOXA2 Task 3 ENCSR310NYI liver Browser Link
SPI1 Task 0 ENCSR000BGQ GM12878 Browser Link
SPI1 Task 1 ENCSR000BGW K562 Browser Link
SPI1 Task 2 ENCSR000BIJ GM12891 Browser Link
SPI1 Task 3 ENCSR000BUW HL-60 Browser Link
CEBPB Task 0 ENCSR000BQI HepG2 Browser Link
CEBPB Task 1 ENCSR000BRQ K562 Browser Link
CEBPB Task 2 ENCSR000DYI A549 Browser Link
CEBPB Task 3 ENCSR000EEE HepG2 Browser Link
CEBPB Task 4 ENCSR000EFM IMR-90 Browser Link
CEBPB Task 5 ENCSR000EHE K562 Browser Link
CEBPB Task 6 ENCSR681NOM GM12878 Browser Link
MAX Task 0 ENCSR000BLP K562 Browser Link
MAX Task 1 ENCSR000DZF GM12878 Browser Link
MAX Task 2 ENCSR000EDS HepG2 Browser Link
MAX Task 3 ENCSR000EFV K562 Browser Link
MAX Task 4 ENCSR000EUP H1 Browser Link
MAX Task 5 ENCSR521IID liver Browser Link
MAX Task 6 ENCSR847DIT liver Browser Link
GABPA Task 0 ENCSR000BHS HeLa-S3 Browser Link
GABPA Task 1 ENCSR000BIW H1 Browser Link
GABPA Task 2 ENCSR000BJK HepG2 Browser Link
GABPA Task 3 ENCSR000BLO K562 Browser Link
GABPA Task 4 ENCSR000BPY A549 Browser Link
GABPA Task 5 ENCSR000BTK HL-60 Browser Link
GABPA Task 6 ENCSR038GMB liver Browser Link
GABPA Task 7 ENCSR331HPA GM12878 Browser Link
GABPA Task 8 ENCSR350ORK liver Browser Link
MAFK Task 0 ENCSR000DYV GM12878 Browser Link
MAFK Task 1 ENCSR000EBS H1 Browser Link
MAFK Task 2 ENCSR000ECK HeLa-S3 Browser Link
MAFK Task 3 ENCSR000EDZ HepG2 Browser Link
MAFK Task 4 ENCSR000EEB HepG2 Browser Link
MAFK Task 5 ENCSR000EFH IMR-90 Browser Link
MAFK Task 6 ENCSR000EGX K562 Browser Link
MAFK Task 7 ENCSR541WQI A549 Browser Link
MAFK Task 8 ENCSR555PBN MCF-7 Browser Link
JUND Task 0 ENCSR000BGK HepG2 Browser Link
JUND Task 1 ENCSR000BKP H1 Browser Link
JUND Task 2 ENCSR000BRF A549 Browser Link
JUND Task 3 ENCSR000BSA HCT116 Browser Link
JUND Task 4 ENCSR000BSK SK-N-SH Browser Link
JUND Task 5 ENCSR000BSU MCF-7 Browser Link
JUND Task 6 ENCSR000BVO T47D Browser Link
JUND Task 7 ENCSR000DYS GM12878 Browser Link
JUND Task 8 ENCSR000EBZ H1 Browser Link
JUND Task 9 ENCSR000EEI HepG2 Browser Link
JUND Task 10 ENCSR000EGN K562 Browser Link
JUND Task 11 ENCSR000EIB SK-N-SH Browser Link
JUND Task 12 ENCSR196HGZ liver Browser Link
JUND Task 13 ENCSR837GTK liver Browser Link
NR3C1-reddytime Task 0 ENCSR000BHE A549 Browser Link
NR3C1-reddytime Task 1 ENCSR000BHF A549 Browser Link
NR3C1-reddytime Task 2 ENCSR000BHG A549 Browser Link
NR3C1-reddytime Task 3 ENCSR000BJC Ishikawa Browser Link
NR3C1-reddytime Task 4 ENCSR000BJR A549 Browser Link
NR3C1-reddytime Task 5 ENCSR255CTA A549 Browser Link
NR3C1-reddytime Task 6 ENCSR287FWE A549 Browser Link
NR3C1-reddytime Task 7 ENCSR385RUW A549 Browser Link
NR3C1-reddytime Task 8 ENCSR424JOE A549 Browser Link
NR3C1-reddytime Task 9 ENCSR660RYY A549 Browser Link
NR3C1-reddytime Task 10 ENCSR686PFM A549 Browser Link
NR3C1-reddytime Task 11 ENCSR691GRA A549 Browser Link
NR3C1-reddytime Task 12 ENCSR720DXT A549 Browser Link
NR3C1-reddytime Task 13 ENCSR773NQB A549 Browser Link
NR3C1-reddytime Task 14 ENCSR919OXR A549 Browser Link
NR3C1-reddytime Task 15 ENCSR952GOL A549 Browser Link
REST Task 0 ENCSR000BGF GM12878 Browser Link
REST Task 1 ENCSR000BHM H1 Browser Link
REST Task 2 ENCSR000BJJ SK-N-SH Browser Link
REST Task 3 ENCSR000BJL HepG2 Browser Link
REST Task 4 ENCSR000BJO Panc1 Browser Link
REST Task 5 ENCSR000BJP PFSK-1 Browser Link
REST Task 6 ENCSR000BMN HeLa-S3 Browser Link
REST Task 7 ENCSR000BMW K562 Browser Link
REST Task 8 ENCSR000BOT HepG2 Browser Link
REST Task 9 ENCSR000BOX PFSK-1 Browser Link
REST Task 10 ENCSR000BOZ SK-N-SH Browser Link
REST Task 11 ENCSR000BPK Panc1 Browser Link
REST Task 12 ENCSR000BQP A549 Browser Link
REST Task 13 ENCSR000BQS GM12878 Browser Link
REST Task 14 ENCSR000BTF HL-60 Browser Link
REST Task 15 ENCSR137ZMQ K562 Browser Link
REST Task 16 ENCSR663WAR H1 Browser Link
REST Task 17 ENCSR867WPH liver Browser Link
REST Task 18 ENCSR892DRK A549 Browser Link
REST Task 19 ENCSR893QWP liver Browser Link

TF-MoDISco motif summaries ΒΆ

Notebooks which show the basic TF-MoDISco motif results, including:

  • All discovered motifs as untrimmed PFMs, CWMs, and hCWMs
  • Trimmed hCWMs
  • Observed/predicted profiles underlying each motif
  • Distance distribution of the seqlets underlying each motif to the nearest peak summit
  • TOMTOM matches of each motif to known JASPAR/HOCOMOCO motifs
  • Examples of seqlets as importance scores that underlie each motif
TF Task index Exp ID Cell type Link
E2F6 Task 0 ENCSR000BLI K562 Count head Profile head
E2F6 Task 1 ENCSR000EWJ K562 Count head Profile head
E2F6 All tasks N/A N/A Count head Profile head
FOXA2 Task 0 ENCSR000BNI HepG2 Count head Profile head
FOXA2 Task 1 ENCSR066EBK HepG2 Count head Profile head
FOXA2 Task 2 ENCSR080XEY liver Count head Profile head
FOXA2 Task 3 ENCSR310NYI liver Count head Profile head
FOXA2 All tasks N/A N/A Count head Profile head
SPI1 Task 0 ENCSR000BGQ GM12878 Count head Profile head
SPI1 Task 1 ENCSR000BGW K562 Count head Profile head
SPI1 Task 2 ENCSR000BIJ GM12891 Count head Profile head
SPI1 Task 3 ENCSR000BUW HL-60 Count head Profile head
SPI1 All tasks N/A N/A Count head Profile head
CEBPB Task 0 ENCSR000BQI HepG2 Count head Profile head
CEBPB Task 1 ENCSR000BRQ K562 Count head Profile head
CEBPB Task 2 ENCSR000DYI A549 Count head Profile head
CEBPB Task 3 ENCSR000EEE HepG2 Count head Profile head
CEBPB Task 4 ENCSR000EFM IMR-90 Count head Profile head
CEBPB Task 5 ENCSR000EHE K562 Count head Profile head
CEBPB Task 6 ENCSR681NOM GM12878 Count head Profile head
CEBPB All tasks N/A N/A Count head Profile head
MAX Task 0 ENCSR000BLP K562 Count head Profile head
MAX Task 1 ENCSR000DZF GM12878 Count head Profile head
MAX Task 2 ENCSR000EDS HepG2 Count head Profile head
MAX Task 3 ENCSR000EFV K562 Count head Profile head
MAX Task 4 ENCSR000EUP H1 Count head Profile head
MAX Task 5 ENCSR521IID liver Count head Profile head
MAX Task 6 ENCSR847DIT liver Count head Profile head
MAX All tasks N/A N/A Count head Profile head
GABPA Task 0 ENCSR000BHS HeLa-S3 Count head Profile head
GABPA Task 1 ENCSR000BIW H1 Count head Profile head
GABPA Task 2 ENCSR000BJK HepG2 Count head Profile head
GABPA Task 3 ENCSR000BLO K562 Count head Profile head
GABPA Task 4 ENCSR000BPY A549 Count head Profile head
GABPA Task 5 ENCSR000BTK HL-60 Count head Profile head
GABPA Task 6 ENCSR038GMB liver Count head Profile head
GABPA Task 7 ENCSR331HPA GM12878 Count head Profile head
GABPA Task 8 ENCSR350ORK liver Count head Profile head
GABPA All tasks N/A N/A Count head Profile head
MAFK Task 0 ENCSR000DYV GM12878 Count head Profile head
MAFK Task 1 ENCSR000EBS H1 Count head Profile head
MAFK Task 2 ENCSR000ECK HeLa-S3 Count head Profile head
MAFK Task 3 ENCSR000EDZ HepG2 Count head Profile head
MAFK Task 4 ENCSR000EEB HepG2 Count head Profile head
MAFK Task 5 ENCSR000EFH IMR-90 Count head Profile head
MAFK Task 6 ENCSR000EGX K562 Count head Profile head
MAFK Task 7 ENCSR541WQI A549 Count head Profile head
MAFK Task 8 ENCSR555PBN MCF-7 Count head Profile head
MAFK All tasks N/A N/A Count head Profile head
JUND Task 0 ENCSR000BGK HepG2 Count head Profile head
JUND Task 1 ENCSR000BKP H1 Count head Profile head
JUND Task 2 ENCSR000BRF A549 Count head Profile head
JUND Task 3 ENCSR000BSA HCT116 Count head Profile head
JUND Task 4 ENCSR000BSK SK-N-SH Count head Profile head
JUND Task 5 ENCSR000BSU MCF-7 Count head Profile head
JUND Task 6 ENCSR000BVO T47D Count head Profile head
JUND Task 7 ENCSR000DYS GM12878 Count head Profile head
JUND Task 8 ENCSR000EBZ H1 Count head Profile head
JUND Task 9 ENCSR000EEI HepG2 Count head Profile head
JUND Task 10 ENCSR000EGN K562 Count head Profile head
JUND Task 11 ENCSR000EIB SK-N-SH Count head Profile head
JUND Task 12 ENCSR196HGZ liver Count head Profile head
JUND Task 13 ENCSR837GTK liver Count head Profile head
JUND All tasks N/A N/A Count head Profile head
NR3C1-reddytime Task 0 ENCSR000BHE A549 Count head Profile head
NR3C1-reddytime Task 1 ENCSR000BHF A549 Count head Profile head
NR3C1-reddytime Task 2 ENCSR000BHG A549 Count head Profile head
NR3C1-reddytime Task 3 ENCSR000BJC Ishikawa Count head Profile head
NR3C1-reddytime Task 4 ENCSR000BJR A549 Count head Profile head
NR3C1-reddytime Task 5 ENCSR255CTA A549 Count head Profile head
NR3C1-reddytime Task 6 ENCSR287FWE A549 Count head Profile head
NR3C1-reddytime Task 7 ENCSR385RUW A549 Count head Profile head
NR3C1-reddytime Task 8 ENCSR424JOE A549 Count head Profile head
NR3C1-reddytime Task 9 ENCSR660RYY A549 Count head Profile head
NR3C1-reddytime Task 10 ENCSR686PFM A549 Count head Profile head
NR3C1-reddytime Task 11 ENCSR691GRA A549 Count head Profile head
NR3C1-reddytime Task 12 ENCSR720DXT A549 Count head Profile head
NR3C1-reddytime Task 13 ENCSR773NQB A549 Count head Profile head
NR3C1-reddytime Task 14 ENCSR919OXR A549 Count head Profile head
NR3C1-reddytime Task 15 ENCSR952GOL A549 Count head Profile head
NR3C1-reddytime All tasks N/A N/A Count head Profile head
REST Task 0 ENCSR000BGF GM12878 Count head Profile head
REST Task 1 ENCSR000BHM H1 Count head Profile head
REST Task 2 ENCSR000BJJ SK-N-SH Count head Profile head
REST Task 3 ENCSR000BJL HepG2 Count head Profile head
REST Task 4 ENCSR000BJO Panc1 Count head Profile head
REST Task 5 ENCSR000BJP PFSK-1 Count head Profile head
REST Task 6 ENCSR000BMN HeLa-S3 Count head Profile head
REST Task 7 ENCSR000BMW K562 Count head Profile head
REST Task 8 ENCSR000BOT HepG2 Count head Profile head
REST Task 9 ENCSR000BOX PFSK-1 Count head Profile head
REST Task 10 ENCSR000BOZ SK-N-SH Count head Profile head
REST Task 11 ENCSR000BPK Panc1 Count head Profile head
REST Task 12 ENCSR000BQP A549 Count head Profile head
REST Task 13 ENCSR000BQS GM12878 Count head Profile head
REST Task 14 ENCSR000BTF HL-60 Count head Profile head
REST Task 15 ENCSR137ZMQ K562 Count head Profile head
REST Task 16 ENCSR663WAR H1 Count head Profile head
REST Task 17 ENCSR867WPH liver Count head Profile head
REST Task 18 ENCSR892DRK A549 Count head Profile head
REST Task 19 ENCSR893QWP liver Count head Profile head
REST All tasks N/A N/A Count head Profile head

TF-MoDISco motif clusters ΒΆ

Notebooks which show clustering between motifs identified between TF-MoDISco runs, including:

  • Clusters of similar TF-MoDISco motifs within the same model (motifs from counts and profile heads pooled)
  • Clusters of similar TF-MoDISco motifs over all 10 folds (non-fine-tuned models)
TF Task index Exp ID Cell type Link
E2F6 Task 0 ENCSR000BLI K562 Fine-tuned model Across all 10 folds
E2F6 Task 1 ENCSR000EWJ K562 Fine-tuned model Across all 10 folds
E2F6 All tasks N/A N/A Fine-tuned model Across all 10 folds
FOXA2 Task 0 ENCSR000BNI HepG2 Fine-tuned model Across all 10 folds
FOXA2 Task 1 ENCSR066EBK HepG2 Fine-tuned model Across all 10 folds
FOXA2 Task 2 ENCSR080XEY liver Fine-tuned model Across all 10 folds
FOXA2 Task 3 ENCSR310NYI liver Fine-tuned model Across all 10 folds
FOXA2 All tasks N/A N/A Fine-tuned model Across all 10 folds
SPI1 Task 0 ENCSR000BGQ GM12878 Fine-tuned model Across all 10 folds
SPI1 Task 1 ENCSR000BGW K562 Fine-tuned model Across all 10 folds
SPI1 Task 2 ENCSR000BIJ GM12891 Fine-tuned model Across all 10 folds
SPI1 Task 3 ENCSR000BUW HL-60 Fine-tuned model Across all 10 folds
SPI1 All tasks N/A N/A Fine-tuned model Across all 10 folds
CEBPB Task 0 ENCSR000BQI HepG2 Fine-tuned model Across all 10 folds
CEBPB Task 1 ENCSR000BRQ K562 Fine-tuned model Across all 10 folds
CEBPB Task 2 ENCSR000DYI A549 Fine-tuned model Across all 10 folds
CEBPB Task 3 ENCSR000EEE HepG2 Fine-tuned model Across all 10 folds
CEBPB Task 4 ENCSR000EFM IMR-90 Fine-tuned model Across all 10 folds
CEBPB Task 5 ENCSR000EHE K562 Fine-tuned model Across all 10 folds
CEBPB Task 6 ENCSR681NOM GM12878 Fine-tuned model Across all 10 folds
CEBPB All tasks N/A N/A Fine-tuned model Across all 10 folds
MAX Task 0 ENCSR000BLP K562 Fine-tuned model Across all 10 folds
MAX Task 1 ENCSR000DZF GM12878 Fine-tuned model Across all 10 folds
MAX Task 2 ENCSR000EDS HepG2 Fine-tuned model Across all 10 folds
MAX Task 3 ENCSR000EFV K562 Fine-tuned model Across all 10 folds
MAX Task 4 ENCSR000EUP H1 Fine-tuned model Across all 10 folds
MAX Task 5 ENCSR521IID liver Fine-tuned model Across all 10 folds
MAX Task 6 ENCSR847DIT liver Fine-tuned model Across all 10 folds
MAX All tasks N/A N/A Fine-tuned model Across all 10 folds
GABPA Task 0 ENCSR000BHS HeLa-S3 Fine-tuned model Across all 10 folds
GABPA Task 1 ENCSR000BIW H1 Fine-tuned model Across all 10 folds
GABPA Task 2 ENCSR000BJK HepG2 Fine-tuned model Across all 10 folds
GABPA Task 3 ENCSR000BLO K562 Fine-tuned model Across all 10 folds
GABPA Task 4 ENCSR000BPY A549 Fine-tuned model Across all 10 folds
GABPA Task 5 ENCSR000BTK HL-60 Fine-tuned model Across all 10 folds
GABPA Task 6 ENCSR038GMB liver Fine-tuned model Across all 10 folds
GABPA Task 7 ENCSR331HPA GM12878 Fine-tuned model Across all 10 folds
GABPA Task 8 ENCSR350ORK liver Fine-tuned model Across all 10 folds
GABPA All tasks N/A N/A Fine-tuned model Across all 10 folds
MAFK Task 0 ENCSR000DYV GM12878 Fine-tuned model Across all 10 folds
MAFK Task 1 ENCSR000EBS H1 Fine-tuned model Across all 10 folds
MAFK Task 2 ENCSR000ECK HeLa-S3 Fine-tuned model Across all 10 folds
MAFK Task 3 ENCSR000EDZ HepG2 Fine-tuned model Across all 10 folds
MAFK Task 4 ENCSR000EEB HepG2 Fine-tuned model Across all 10 folds
MAFK Task 5 ENCSR000EFH IMR-90 Fine-tuned model Across all 10 folds
MAFK Task 6 ENCSR000EGX K562 Fine-tuned model Across all 10 folds
MAFK Task 7 ENCSR541WQI A549 Fine-tuned model Across all 10 folds
MAFK Task 8 ENCSR555PBN MCF-7 Fine-tuned model Across all 10 folds
MAFK All tasks N/A N/A Fine-tuned model Across all 10 folds
JUND Task 0 ENCSR000BGK HepG2 Fine-tuned model Across all 10 folds
JUND Task 1 ENCSR000BKP H1 Fine-tuned model Across all 10 folds
JUND Task 2 ENCSR000BRF A549 Fine-tuned model Across all 10 folds
JUND Task 3 ENCSR000BSA HCT116 Fine-tuned model Across all 10 folds
JUND Task 4 ENCSR000BSK SK-N-SH Fine-tuned model Across all 10 folds
JUND Task 5 ENCSR000BSU MCF-7 Fine-tuned model Across all 10 folds
JUND Task 6 ENCSR000BVO T47D Fine-tuned model Across all 10 folds
JUND Task 7 ENCSR000DYS GM12878 Fine-tuned model Across all 10 folds
JUND Task 8 ENCSR000EBZ H1 Fine-tuned model Across all 10 folds
JUND Task 9 ENCSR000EEI HepG2 Fine-tuned model Across all 10 folds
JUND Task 10 ENCSR000EGN K562 Fine-tuned model Across all 10 folds
JUND Task 11 ENCSR000EIB SK-N-SH Fine-tuned model Across all 10 folds
JUND Task 12 ENCSR196HGZ liver Fine-tuned model Across all 10 folds
JUND Task 13 ENCSR837GTK liver Fine-tuned model Across all 10 folds
JUND All tasks N/A N/A Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 0 ENCSR000BHE A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 1 ENCSR000BHF A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 2 ENCSR000BHG A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 3 ENCSR000BJC Ishikawa Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 4 ENCSR000BJR A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 5 ENCSR255CTA A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 6 ENCSR287FWE A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 7 ENCSR385RUW A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 8 ENCSR424JOE A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 9 ENCSR660RYY A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 10 ENCSR686PFM A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 11 ENCSR691GRA A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 12 ENCSR720DXT A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 13 ENCSR773NQB A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 14 ENCSR919OXR A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 15 ENCSR952GOL A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime All tasks N/A N/A Fine-tuned model Across all 10 folds
REST Task 0 ENCSR000BGF GM12878 Fine-tuned model Across all 10 folds
REST Task 1 ENCSR000BHM H1 Fine-tuned model Across all 10 folds
REST Task 2 ENCSR000BJJ SK-N-SH Fine-tuned model Across all 10 folds
REST Task 3 ENCSR000BJL HepG2 Fine-tuned model Across all 10 folds
REST Task 4 ENCSR000BJO Panc1 Fine-tuned model Across all 10 folds
REST Task 5 ENCSR000BJP PFSK-1 Fine-tuned model Across all 10 folds
REST Task 6 ENCSR000BMN HeLa-S3 Fine-tuned model Across all 10 folds
REST Task 7 ENCSR000BMW K562 Fine-tuned model Across all 10 folds
REST Task 8 ENCSR000BOT HepG2 Fine-tuned model Across all 10 folds
REST Task 9 ENCSR000BOX PFSK-1 Fine-tuned model Across all 10 folds
REST Task 10 ENCSR000BOZ SK-N-SH Fine-tuned model Across all 10 folds
REST Task 11 ENCSR000BPK Panc1 Fine-tuned model Across all 10 folds
REST Task 12 ENCSR000BQP A549 Fine-tuned model Across all 10 folds
REST Task 13 ENCSR000BQS GM12878 Fine-tuned model Across all 10 folds
REST Task 14 ENCSR000BTF HL-60 Fine-tuned model Across all 10 folds
REST Task 15 ENCSR137ZMQ K562 Fine-tuned model Across all 10 folds
REST Task 16 ENCSR663WAR H1 Fine-tuned model Across all 10 folds
REST Task 17 ENCSR867WPH liver Fine-tuned model Across all 10 folds
REST Task 18 ENCSR892DRK A549 Fine-tuned model Across all 10 folds
REST Task 19 ENCSR893QWP liver Fine-tuned model Across all 10 folds
REST All tasks N/A N/A Fine-tuned model Across all 10 folds

TF-MoDISco motif clusters (motifPiles) ΒΆ

Notebooks which show clustering between motifs identified between TF-MoDISco runs, including:

  • Clusters of similar TF-MoDISco motifs within the same model (motifs from counts and profile heads pooled)
  • Clusters of similar TF-MoDISco motifs over all 10 folds (non-fine-tuned models)

Unlike the other motif clusters notebooks, these are simple trees generated by the motifPiles.R library

TF Task index Exp ID Cell type Link
E2F6 Task 0 ENCSR000BLI K562 Fine-tuned model Across all 10 folds
E2F6 Task 1 ENCSR000EWJ K562 Fine-tuned model Across all 10 folds
E2F6 All tasks N/A N/A Fine-tuned model Across all 10 folds
FOXA2 Task 0 ENCSR000BNI HepG2 Fine-tuned model Across all 10 folds
FOXA2 Task 1 ENCSR066EBK HepG2 Fine-tuned model Across all 10 folds
FOXA2 Task 2 ENCSR080XEY liver Fine-tuned model Across all 10 folds
FOXA2 Task 3 ENCSR310NYI liver Fine-tuned model Across all 10 folds
FOXA2 All tasks N/A N/A Fine-tuned model Across all 10 folds
SPI1 Task 0 ENCSR000BGQ GM12878 Fine-tuned model Across all 10 folds
SPI1 Task 1 ENCSR000BGW K562 Fine-tuned model Across all 10 folds
SPI1 Task 2 ENCSR000BIJ GM12891 Fine-tuned model Across all 10 folds
SPI1 Task 3 ENCSR000BUW HL-60 Fine-tuned model Across all 10 folds
SPI1 All tasks N/A N/A Fine-tuned model Across all 10 folds
CEBPB Task 0 ENCSR000BQI HepG2 Fine-tuned model Across all 10 folds
CEBPB Task 1 ENCSR000BRQ K562 Fine-tuned model Across all 10 folds
CEBPB Task 2 ENCSR000DYI A549 Fine-tuned model Across all 10 folds
CEBPB Task 3 ENCSR000EEE HepG2 Fine-tuned model Across all 10 folds
CEBPB Task 4 ENCSR000EFM IMR-90 Fine-tuned model Across all 10 folds
CEBPB Task 5 ENCSR000EHE K562 Fine-tuned model Across all 10 folds
CEBPB Task 6 ENCSR681NOM GM12878 Fine-tuned model Across all 10 folds
CEBPB All tasks N/A N/A Fine-tuned model Across all 10 folds
MAX Task 0 ENCSR000BLP K562 Fine-tuned model Across all 10 folds
MAX Task 1 ENCSR000DZF GM12878 Fine-tuned model Across all 10 folds
MAX Task 2 ENCSR000EDS HepG2 Fine-tuned model Across all 10 folds
MAX Task 3 ENCSR000EFV K562 Fine-tuned model Across all 10 folds
MAX Task 4 ENCSR000EUP H1 Fine-tuned model Across all 10 folds
MAX Task 5 ENCSR521IID liver Fine-tuned model Across all 10 folds
MAX Task 6 ENCSR847DIT liver Fine-tuned model Across all 10 folds
MAX All tasks N/A N/A Fine-tuned model Across all 10 folds
GABPA Task 0 ENCSR000BHS HeLa-S3 Fine-tuned model Across all 10 folds
GABPA Task 1 ENCSR000BIW H1 Fine-tuned model Across all 10 folds
GABPA Task 2 ENCSR000BJK HepG2 Fine-tuned model Across all 10 folds
GABPA Task 3 ENCSR000BLO K562 Fine-tuned model Across all 10 folds
GABPA Task 4 ENCSR000BPY A549 Fine-tuned model Across all 10 folds
GABPA Task 5 ENCSR000BTK HL-60 Fine-tuned model Across all 10 folds
GABPA Task 6 ENCSR038GMB liver Fine-tuned model Across all 10 folds
GABPA Task 7 ENCSR331HPA GM12878 Fine-tuned model Across all 10 folds
GABPA Task 8 ENCSR350ORK liver Fine-tuned model Across all 10 folds
GABPA All tasks N/A N/A Fine-tuned model Across all 10 folds
MAFK Task 0 ENCSR000DYV GM12878 Fine-tuned model Across all 10 folds
MAFK Task 1 ENCSR000EBS H1 Fine-tuned model Across all 10 folds
MAFK Task 2 ENCSR000ECK HeLa-S3 Fine-tuned model Across all 10 folds
MAFK Task 3 ENCSR000EDZ HepG2 Fine-tuned model Across all 10 folds
MAFK Task 4 ENCSR000EEB HepG2 Fine-tuned model Across all 10 folds
MAFK Task 5 ENCSR000EFH IMR-90 Fine-tuned model Across all 10 folds
MAFK Task 6 ENCSR000EGX K562 Fine-tuned model Across all 10 folds
MAFK Task 7 ENCSR541WQI A549 Fine-tuned model Across all 10 folds
MAFK Task 8 ENCSR555PBN MCF-7 Fine-tuned model Across all 10 folds
MAFK All tasks N/A N/A Fine-tuned model Across all 10 folds
JUND Task 0 ENCSR000BGK HepG2 Fine-tuned model Across all 10 folds
JUND Task 1 ENCSR000BKP H1 Fine-tuned model Across all 10 folds
JUND Task 2 ENCSR000BRF A549 Fine-tuned model Across all 10 folds
JUND Task 3 ENCSR000BSA HCT116 Fine-tuned model Across all 10 folds
JUND Task 4 ENCSR000BSK SK-N-SH Fine-tuned model Across all 10 folds
JUND Task 5 ENCSR000BSU MCF-7 Fine-tuned model Across all 10 folds
JUND Task 6 ENCSR000BVO T47D Fine-tuned model Across all 10 folds
JUND Task 7 ENCSR000DYS GM12878 Fine-tuned model Across all 10 folds
JUND Task 8 ENCSR000EBZ H1 Fine-tuned model Across all 10 folds
JUND Task 9 ENCSR000EEI HepG2 Fine-tuned model Across all 10 folds
JUND Task 10 ENCSR000EGN K562 Fine-tuned model Across all 10 folds
JUND Task 11 ENCSR000EIB SK-N-SH Fine-tuned model Across all 10 folds
JUND Task 12 ENCSR196HGZ liver Fine-tuned model Across all 10 folds
JUND Task 13 ENCSR837GTK liver Fine-tuned model Across all 10 folds
JUND All tasks N/A N/A Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 0 ENCSR000BHE A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 1 ENCSR000BHF A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 2 ENCSR000BHG A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 3 ENCSR000BJC Ishikawa Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 4 ENCSR000BJR A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 5 ENCSR255CTA A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 6 ENCSR287FWE A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 7 ENCSR385RUW A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 8 ENCSR424JOE A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 9 ENCSR660RYY A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 10 ENCSR686PFM A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 11 ENCSR691GRA A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 12 ENCSR720DXT A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 13 ENCSR773NQB A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 14 ENCSR919OXR A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime Task 15 ENCSR952GOL A549 Fine-tuned model Across all 10 folds
NR3C1-reddytime All tasks N/A N/A Fine-tuned model Across all 10 folds
REST Task 0 ENCSR000BGF GM12878 Fine-tuned model Across all 10 folds
REST Task 1 ENCSR000BHM H1 Fine-tuned model Across all 10 folds
REST Task 2 ENCSR000BJJ SK-N-SH Fine-tuned model Across all 10 folds
REST Task 3 ENCSR000BJL HepG2 Fine-tuned model Across all 10 folds
REST Task 4 ENCSR000BJO Panc1 Fine-tuned model Across all 10 folds
REST Task 5 ENCSR000BJP PFSK-1 Fine-tuned model Across all 10 folds
REST Task 6 ENCSR000BMN HeLa-S3 Fine-tuned model Across all 10 folds
REST Task 7 ENCSR000BMW K562 Fine-tuned model Across all 10 folds
REST Task 8 ENCSR000BOT HepG2 Fine-tuned model Across all 10 folds
REST Task 9 ENCSR000BOX PFSK-1 Fine-tuned model Across all 10 folds
REST Task 10 ENCSR000BOZ SK-N-SH Fine-tuned model Across all 10 folds
REST Task 11 ENCSR000BPK Panc1 Fine-tuned model Across all 10 folds
REST Task 12 ENCSR000BQP A549 Fine-tuned model Across all 10 folds
REST Task 13 ENCSR000BQS GM12878 Fine-tuned model Across all 10 folds
REST Task 14 ENCSR000BTF HL-60 Fine-tuned model Across all 10 folds
REST Task 15 ENCSR137ZMQ K562 Fine-tuned model Across all 10 folds
REST Task 16 ENCSR663WAR H1 Fine-tuned model Across all 10 folds
REST Task 17 ENCSR867WPH liver Fine-tuned model Across all 10 folds
REST Task 18 ENCSR892DRK A549 Fine-tuned model Across all 10 folds
REST Task 19 ENCSR893QWP liver Fine-tuned model Across all 10 folds
REST All tasks N/A N/A Fine-tuned model Across all 10 folds

TF-MoDISco motif instance calls ΒΆ

Notebooks which show the motif hits from TF-MoDISco motifs within peaks, including:

  • Distribution of number of total motif hits (over all motifs) per peak
  • Fraction of peaks that contain each individual motif
  • Examples of motif calls in the importance scores
  • Indicator matrix of which peaks have what motifs
  • Heatmap of co-occurrence between motifs within peaks
  • Distance distributions between significantly co-occurring motifs

There are two versions hits for each set of motifs: called by the TF-MoDISco hit scoring algorithm or with MOODS

TF Task index Exp ID Cell type Link: TF-MoDISco hit scorer Link: MOODS
E2F6 Task 0 ENCSR000BLI K562 Count head Profile head Count head Profile head
E2F6 Task 1 ENCSR000EWJ K562 Count head Profile head Count head Profile head
E2F6 All tasks N/A N/A Count head Profile head Count head Profile head
FOXA2 Task 0 ENCSR000BNI HepG2 Count head Profile head Count head Profile head
FOXA2 Task 1 ENCSR066EBK HepG2 Count head Profile head Count head Profile head
FOXA2 Task 2 ENCSR080XEY liver Count head Profile head Count head Profile head
FOXA2 Task 3 ENCSR310NYI liver Count head Profile head Count head Profile head
FOXA2 All tasks N/A N/A Count head Profile head Count head Profile head
SPI1 Task 0 ENCSR000BGQ GM12878 Count head Profile head Count head Profile head
SPI1 Task 1 ENCSR000BGW K562 Count head Profile head Count head Profile head
SPI1 Task 2 ENCSR000BIJ GM12891 Count head Profile head Count head Profile head
SPI1 Task 3 ENCSR000BUW HL-60 Count head Profile head Count head Profile head
SPI1 All tasks N/A N/A Count head Profile head Count head Profile head
CEBPB Task 0 ENCSR000BQI HepG2 Count head Profile head Count head Profile head
CEBPB Task 1 ENCSR000BRQ K562 Count head Profile head Count head Profile head
CEBPB Task 2 ENCSR000DYI A549 Count head Profile head Count head Profile head
CEBPB Task 3 ENCSR000EEE HepG2 Count head Profile head Count head Profile head
CEBPB Task 4 ENCSR000EFM IMR-90 Count head Profile head Count head Profile head
CEBPB Task 5 ENCSR000EHE K562 Count head Profile head Count head Profile head
CEBPB Task 6 ENCSR681NOM GM12878 Count head Profile head Count head Profile head
CEBPB All tasks N/A N/A Count head Profile head Count head Profile head
MAX Task 0 ENCSR000BLP K562 Count head Profile head Count head Profile head
MAX Task 1 ENCSR000DZF GM12878 Count head Profile head Count head Profile head
MAX Task 2 ENCSR000EDS HepG2 Count head Profile head Count head Profile head
MAX Task 3 ENCSR000EFV K562 Count head Profile head Count head Profile head
MAX Task 4 ENCSR000EUP H1 Count head Profile head Count head Profile head
MAX Task 5 ENCSR521IID liver Count head Profile head Count head Profile head
MAX Task 6 ENCSR847DIT liver Count head Profile head Count head Profile head
MAX All tasks N/A N/A Count head Profile head Count head Profile head
GABPA Task 0 ENCSR000BHS HeLa-S3 Count head Profile head Count head Profile head
GABPA Task 1 ENCSR000BIW H1 Count head Profile head Count head Profile head
GABPA Task 2 ENCSR000BJK HepG2 Count head Profile head Count head Profile head
GABPA Task 3 ENCSR000BLO K562 Count head Profile head Count head Profile head
GABPA Task 4 ENCSR000BPY A549 Count head Profile head Count head Profile head
GABPA Task 5 ENCSR000BTK HL-60 Count head Profile head Count head Profile head
GABPA Task 6 ENCSR038GMB liver Count head Profile head Count head Profile head
GABPA Task 7 ENCSR331HPA GM12878 Count head Profile head Count head Profile head
GABPA Task 8 ENCSR350ORK liver Count head Profile head Count head Profile head
GABPA All tasks N/A N/A Count head Profile head Count head Profile head
MAFK Task 0 ENCSR000DYV GM12878 Count head Profile head Count head Profile head
MAFK Task 1 ENCSR000EBS H1 Count head Profile head Count head Profile head
MAFK Task 2 ENCSR000ECK HeLa-S3 Count head Profile head Count head Profile head
MAFK Task 3 ENCSR000EDZ HepG2 Count head Profile head Count head Profile head
MAFK Task 4 ENCSR000EEB HepG2 Count head Profile head Count head Profile head
MAFK Task 5 ENCSR000EFH IMR-90 Count head Profile head Count head Profile head
MAFK Task 6 ENCSR000EGX K562 Count head Profile head Count head Profile head
MAFK Task 7 ENCSR541WQI A549 Count head Profile head Count head Profile head
MAFK Task 8 ENCSR555PBN MCF-7 Count head Profile head Count head Profile head
MAFK All tasks N/A N/A Count head Profile head Count head Profile head
JUND Task 0 ENCSR000BGK HepG2 Count head Profile head Count head Profile head
JUND Task 1 ENCSR000BKP H1 Count head Profile head Count head Profile head
JUND Task 2 ENCSR000BRF A549 Count head Profile head Count head Profile head
JUND Task 3 ENCSR000BSA HCT116 Count head Profile head Count head Profile head
JUND Task 4 ENCSR000BSK SK-N-SH Count head Profile head Count head Profile head
JUND Task 5 ENCSR000BSU MCF-7 Count head Profile head Count head Profile head
JUND Task 6 ENCSR000BVO T47D Count head Profile head Count head Profile head
JUND Task 7 ENCSR000DYS GM12878 Count head Profile head Count head Profile head
JUND Task 8 ENCSR000EBZ H1 Count head Profile head Count head Profile head
JUND Task 9 ENCSR000EEI HepG2 Count head Profile head Count head Profile head
JUND Task 10 ENCSR000EGN K562 Count head Profile head Count head Profile head
JUND Task 11 ENCSR000EIB SK-N-SH Count head Profile head Count head Profile head
JUND Task 12 ENCSR196HGZ liver Count head Profile head Count head Profile head
JUND Task 13 ENCSR837GTK liver Count head Profile head Count head Profile head
JUND All tasks N/A N/A Count head Profile head Count head Profile head
NR3C1-reddytime Task 0 ENCSR000BHE A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 1 ENCSR000BHF A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 2 ENCSR000BHG A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 3 ENCSR000BJC Ishikawa Count head Profile head Count head Profile head
NR3C1-reddytime Task 4 ENCSR000BJR A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 5 ENCSR255CTA A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 6 ENCSR287FWE A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 7 ENCSR385RUW A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 8 ENCSR424JOE A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 9 ENCSR660RYY A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 10 ENCSR686PFM A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 11 ENCSR691GRA A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 12 ENCSR720DXT A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 13 ENCSR773NQB A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 14 ENCSR919OXR A549 Count head Profile head Count head Profile head
NR3C1-reddytime Task 15 ENCSR952GOL A549 Count head Profile head Count head Profile head
NR3C1-reddytime All tasks N/A N/A Count head Profile head Count head Profile head
REST Task 0 ENCSR000BGF GM12878 Count head Profile head Count head Profile head
REST Task 1 ENCSR000BHM H1 Count head Profile head Count head Profile head
REST Task 2 ENCSR000BJJ SK-N-SH Count head Profile head Count head Profile head
REST Task 3 ENCSR000BJL HepG2 Count head Profile head Count head Profile head
REST Task 4 ENCSR000BJO Panc1 Count head Profile head Count head Profile head
REST Task 5 ENCSR000BJP PFSK-1 Count head Profile head Count head Profile head
REST Task 6 ENCSR000BMN HeLa-S3 Count head Profile head Count head Profile head
REST Task 7 ENCSR000BMW K562 Count head Profile head Count head Profile head
REST Task 8 ENCSR000BOT HepG2 Count head Profile head Count head Profile head
REST Task 9 ENCSR000BOX PFSK-1 Count head Profile head Count head Profile head
REST Task 10 ENCSR000BOZ SK-N-SH Count head Profile head Count head Profile head
REST Task 11 ENCSR000BPK Panc1 Count head Profile head Count head Profile head
REST Task 12 ENCSR000BQP A549 Count head Profile head Count head Profile head
REST Task 13 ENCSR000BQS GM12878 Count head Profile head Count head Profile head
REST Task 14 ENCSR000BTF HL-60 Count head Profile head Count head Profile head
REST Task 15 ENCSR137ZMQ K562 Count head Profile head Count head Profile head
REST Task 16 ENCSR663WAR H1 Count head Profile head Count head Profile head
REST Task 17 ENCSR867WPH liver Count head Profile head Count head Profile head
REST Task 18 ENCSR892DRK A549 Count head Profile head Count head Profile head
REST Task 19 ENCSR893QWP liver Count head Profile head Count head Profile head
REST All tasks N/A N/A Count head Profile head Count head Profile head

HOMER, MEME, and DiChIPMunk motifs ΒΆ

Notebooks which show the motifs discovered by HOMER, MEME, and DiChIPMunk vs TF-MoDISco, including:

  • Motifs discovered on peaks
  • Motifs discovered on seqlets

For each TF-MoDISco run, we match the motifs discovered by TF-MoDISco to the motifs discovered by HOMER/MEME/DiChIPMunk run on the same set of peaks, or the TF-MoDISco seqlets.

TF Task index Exp ID Cell type Link
E2F6 Task 0 ENCSR000BLI K562 Count head Profile head
E2F6 Task 1 ENCSR000EWJ K562 Count head Profile head
E2F6 All tasks N/A N/A Count head Profile head
FOXA2 Task 0 ENCSR000BNI HepG2 Count head Profile head
FOXA2 Task 1 ENCSR066EBK HepG2 Count head Profile head
FOXA2 Task 2 ENCSR080XEY liver Count head Profile head
FOXA2 Task 3 ENCSR310NYI liver Count head Profile head
FOXA2 All tasks N/A N/A Count head Profile head
SPI1 Task 0 ENCSR000BGQ GM12878 Count head Profile head
SPI1 Task 1 ENCSR000BGW K562 Count head Profile head
SPI1 Task 2 ENCSR000BIJ GM12891 Count head Profile head
SPI1 Task 3 ENCSR000BUW HL-60 Count head Profile head
SPI1 All tasks N/A N/A Count head Profile head
CEBPB Task 0 ENCSR000BQI HepG2 Count head Profile head
CEBPB Task 1 ENCSR000BRQ K562 Count head Profile head
CEBPB Task 2 ENCSR000DYI A549 Count head Profile head
CEBPB Task 3 ENCSR000EEE HepG2 Count head Profile head
CEBPB Task 4 ENCSR000EFM IMR-90 Count head Profile head
CEBPB Task 5 ENCSR000EHE K562 Count head Profile head
CEBPB Task 6 ENCSR681NOM GM12878 Count head Profile head
CEBPB All tasks N/A N/A Count head Profile head
MAX Task 0 ENCSR000BLP K562 Count head Profile head
MAX Task 1 ENCSR000DZF GM12878 Count head Profile head
MAX Task 2 ENCSR000EDS HepG2 Count head Profile head
MAX Task 3 ENCSR000EFV K562 Count head Profile head
MAX Task 4 ENCSR000EUP H1 Count head Profile head
MAX Task 5 ENCSR521IID liver Count head Profile head
MAX Task 6 ENCSR847DIT liver Count head Profile head
MAX All tasks N/A N/A Count head Profile head
GABPA Task 0 ENCSR000BHS HeLa-S3 Count head Profile head
GABPA Task 1 ENCSR000BIW H1 Count head Profile head
GABPA Task 2 ENCSR000BJK HepG2 Count head Profile head
GABPA Task 3 ENCSR000BLO K562 Count head Profile head
GABPA Task 4 ENCSR000BPY A549 Count head Profile head
GABPA Task 5 ENCSR000BTK HL-60 Count head Profile head
GABPA Task 6 ENCSR038GMB liver Count head Profile head
GABPA Task 7 ENCSR331HPA GM12878 Count head Profile head
GABPA Task 8 ENCSR350ORK liver Count head Profile head
GABPA All tasks N/A N/A Count head Profile head
MAFK Task 0 ENCSR000DYV GM12878 Count head Profile head
MAFK Task 1 ENCSR000EBS H1 Count head Profile head
MAFK Task 2 ENCSR000ECK HeLa-S3 Count head Profile head
MAFK Task 3 ENCSR000EDZ HepG2 Count head Profile head
MAFK Task 4 ENCSR000EEB HepG2 Count head Profile head
MAFK Task 5 ENCSR000EFH IMR-90 Count head Profile head
MAFK Task 6 ENCSR000EGX K562 Count head Profile head
MAFK Task 7 ENCSR541WQI A549 Count head Profile head
MAFK Task 8 ENCSR555PBN MCF-7 Count head Profile head
MAFK All tasks N/A N/A Count head Profile head
JUND Task 0 ENCSR000BGK HepG2 Count head Profile head
JUND Task 1 ENCSR000BKP H1 Count head Profile head
JUND Task 2 ENCSR000BRF A549 Count head Profile head
JUND Task 3 ENCSR000BSA HCT116 Count head Profile head
JUND Task 4 ENCSR000BSK SK-N-SH Count head Profile head
JUND Task 5 ENCSR000BSU MCF-7 Count head Profile head
JUND Task 6 ENCSR000BVO T47D Count head Profile head
JUND Task 7 ENCSR000DYS GM12878 Count head Profile head
JUND Task 8 ENCSR000EBZ H1 Count head Profile head
JUND Task 9 ENCSR000EEI HepG2 Count head Profile head
JUND Task 10 ENCSR000EGN K562 Count head Profile head
JUND Task 11 ENCSR000EIB SK-N-SH Count head Profile head
JUND Task 12 ENCSR196HGZ liver Count head Profile head
JUND Task 13 ENCSR837GTK liver Count head Profile head
JUND All tasks N/A N/A Count head Profile head
NR3C1-reddytime Task 0 ENCSR000BHE A549 Count head Profile head
NR3C1-reddytime Task 1 ENCSR000BHF A549 Count head Profile head
NR3C1-reddytime Task 2 ENCSR000BHG A549 Count head Profile head
NR3C1-reddytime Task 3 ENCSR000BJC Ishikawa Count head Profile head
NR3C1-reddytime Task 4 ENCSR000BJR A549 Count head Profile head
NR3C1-reddytime Task 5 ENCSR255CTA A549 Count head Profile head
NR3C1-reddytime Task 6 ENCSR287FWE A549 Count head Profile head
NR3C1-reddytime Task 7 ENCSR385RUW A549 Count head Profile head
NR3C1-reddytime Task 8 ENCSR424JOE A549 Count head Profile head
NR3C1-reddytime Task 9 ENCSR660RYY A549 Count head Profile head
NR3C1-reddytime Task 10 ENCSR686PFM A549 Count head Profile head
NR3C1-reddytime Task 11 ENCSR691GRA A549 Count head Profile head
NR3C1-reddytime Task 12 ENCSR720DXT A549 Count head Profile head
NR3C1-reddytime Task 13 ENCSR773NQB A549 Count head Profile head
NR3C1-reddytime Task 14 ENCSR919OXR A549 Count head Profile head
NR3C1-reddytime Task 15 ENCSR952GOL A549 Count head Profile head
NR3C1-reddytime All tasks N/A N/A Count head Profile head
REST Task 0 ENCSR000BGF GM12878 Count head Profile head
REST Task 1 ENCSR000BHM H1 Count head Profile head
REST Task 2 ENCSR000BJJ SK-N-SH Count head Profile head
REST Task 3 ENCSR000BJL HepG2 Count head Profile head
REST Task 4 ENCSR000BJO Panc1 Count head Profile head
REST Task 5 ENCSR000BJP PFSK-1 Count head Profile head
REST Task 6 ENCSR000BMN HeLa-S3 Count head Profile head
REST Task 7 ENCSR000BMW K562 Count head Profile head
REST Task 8 ENCSR000BOT HepG2 Count head Profile head
REST Task 9 ENCSR000BOX PFSK-1 Count head Profile head
REST Task 10 ENCSR000BOZ SK-N-SH Count head Profile head
REST Task 11 ENCSR000BPK Panc1 Count head Profile head
REST Task 12 ENCSR000BQP A549 Count head Profile head
REST Task 13 ENCSR000BQS GM12878 Count head Profile head
REST Task 14 ENCSR000BTF HL-60 Count head Profile head
REST Task 15 ENCSR137ZMQ K562 Count head Profile head
REST Task 16 ENCSR663WAR H1 Count head Profile head
REST Task 17 ENCSR867WPH liver Count head Profile head
REST Task 18 ENCSR892DRK A549 Count head Profile head
REST Task 19 ENCSR893QWP liver Count head Profile head
REST All tasks N/A N/A Count head Profile head

Convolutional filter motifs ΒΆ

Notebooks which show the motifs discovered from the convolutional filters, including:

  • Motifs derived from highly-activating sequences for each convolutional filter
  • Motifs derived from each convolutional filter itself

For each model, we show the motifs discovered.

TF Task index Exp ID Cell type Link
E2F6 Task 0 ENCSR000BLI K562 Fine-tuned model
E2F6 Task 1 ENCSR000EWJ K562 Fine-tuned model
E2F6 All tasks N/A N/A Fine-tuned model
FOXA2 Task 0 ENCSR000BNI HepG2 Fine-tuned model
FOXA2 Task 1 ENCSR066EBK HepG2 Fine-tuned model
FOXA2 Task 2 ENCSR080XEY liver Fine-tuned model
FOXA2 Task 3 ENCSR310NYI liver Fine-tuned model
FOXA2 All tasks N/A N/A Fine-tuned model
SPI1 Task 0 ENCSR000BGQ GM12878 Fine-tuned model
SPI1 Task 1 ENCSR000BGW K562 Fine-tuned model
SPI1 Task 2 ENCSR000BIJ GM12891 Fine-tuned model
SPI1 Task 3 ENCSR000BUW HL-60 Fine-tuned model
SPI1 All tasks N/A N/A Fine-tuned model
CEBPB Task 0 ENCSR000BQI HepG2 Fine-tuned model
CEBPB Task 1 ENCSR000BRQ K562 Fine-tuned model
CEBPB Task 2 ENCSR000DYI A549 Fine-tuned model
CEBPB Task 3 ENCSR000EEE HepG2 Fine-tuned model
CEBPB Task 4 ENCSR000EFM IMR-90 Fine-tuned model
CEBPB Task 5 ENCSR000EHE K562 Fine-tuned model
CEBPB Task 6 ENCSR681NOM GM12878 Fine-tuned model
CEBPB All tasks N/A N/A Fine-tuned model
MAX Task 0 ENCSR000BLP K562 Fine-tuned model
MAX Task 1 ENCSR000DZF GM12878 Fine-tuned model
MAX Task 2 ENCSR000EDS HepG2 Fine-tuned model
MAX Task 3 ENCSR000EFV K562 Fine-tuned model
MAX Task 4 ENCSR000EUP H1 Fine-tuned model
MAX Task 5 ENCSR521IID liver Fine-tuned model
MAX Task 6 ENCSR847DIT liver Fine-tuned model
MAX All tasks N/A N/A Fine-tuned model
GABPA Task 0 ENCSR000BHS HeLa-S3 Fine-tuned model
GABPA Task 1 ENCSR000BIW H1 Fine-tuned model
GABPA Task 2 ENCSR000BJK HepG2 Fine-tuned model
GABPA Task 3 ENCSR000BLO K562 Fine-tuned model
GABPA Task 4 ENCSR000BPY A549 Fine-tuned model
GABPA Task 5 ENCSR000BTK HL-60 Fine-tuned model
GABPA Task 6 ENCSR038GMB liver Fine-tuned model
GABPA Task 7 ENCSR331HPA GM12878 Fine-tuned model
GABPA Task 8 ENCSR350ORK liver Fine-tuned model
GABPA All tasks N/A N/A Fine-tuned model
MAFK Task 0 ENCSR000DYV GM12878 Fine-tuned model
MAFK Task 1 ENCSR000EBS H1 Fine-tuned model
MAFK Task 2 ENCSR000ECK HeLa-S3 Fine-tuned model
MAFK Task 3 ENCSR000EDZ HepG2 Fine-tuned model
MAFK Task 4 ENCSR000EEB HepG2 Fine-tuned model
MAFK Task 5 ENCSR000EFH IMR-90 Fine-tuned model
MAFK Task 6 ENCSR000EGX K562 Fine-tuned model
MAFK Task 7 ENCSR541WQI A549 Fine-tuned model
MAFK Task 8 ENCSR555PBN MCF-7 Fine-tuned model
MAFK All tasks N/A N/A Fine-tuned model
JUND Task 0 ENCSR000BGK HepG2 Fine-tuned model
JUND Task 1 ENCSR000BKP H1 Fine-tuned model
JUND Task 2 ENCSR000BRF A549 Fine-tuned model
JUND Task 3 ENCSR000BSA HCT116 Fine-tuned model
JUND Task 4 ENCSR000BSK SK-N-SH Fine-tuned model
JUND Task 5 ENCSR000BSU MCF-7 Fine-tuned model
JUND Task 6 ENCSR000BVO T47D Fine-tuned model
JUND Task 7 ENCSR000DYS GM12878 Fine-tuned model
JUND Task 8 ENCSR000EBZ H1 Fine-tuned model
JUND Task 9 ENCSR000EEI HepG2 Fine-tuned model
JUND Task 10 ENCSR000EGN K562 Fine-tuned model
JUND Task 11 ENCSR000EIB SK-N-SH Fine-tuned model
JUND Task 12 ENCSR196HGZ liver Fine-tuned model
JUND Task 13 ENCSR837GTK liver Fine-tuned model
JUND All tasks N/A N/A Fine-tuned model
NR3C1-reddytime Task 0 ENCSR000BHE A549 Fine-tuned model
NR3C1-reddytime Task 1 ENCSR000BHF A549 Fine-tuned model
NR3C1-reddytime Task 2 ENCSR000BHG A549 Fine-tuned model
NR3C1-reddytime Task 3 ENCSR000BJC Ishikawa Fine-tuned model
NR3C1-reddytime Task 4 ENCSR000BJR A549 Fine-tuned model
NR3C1-reddytime Task 5 ENCSR255CTA A549 Fine-tuned model
NR3C1-reddytime Task 6 ENCSR287FWE A549 Fine-tuned model
NR3C1-reddytime Task 7 ENCSR385RUW A549 Fine-tuned model
NR3C1-reddytime Task 8 ENCSR424JOE A549 Fine-tuned model
NR3C1-reddytime Task 9 ENCSR660RYY A549 Fine-tuned model
NR3C1-reddytime Task 10 ENCSR686PFM A549 Fine-tuned model
NR3C1-reddytime Task 11 ENCSR691GRA A549 Fine-tuned model
NR3C1-reddytime Task 12 ENCSR720DXT A549 Fine-tuned model
NR3C1-reddytime Task 13 ENCSR773NQB A549 Fine-tuned model
NR3C1-reddytime Task 14 ENCSR919OXR A549 Fine-tuned model
NR3C1-reddytime Task 15 ENCSR952GOL A549 Fine-tuned model
NR3C1-reddytime All tasks N/A N/A Fine-tuned model
REST Task 0 ENCSR000BGF GM12878 Fine-tuned model
REST Task 1 ENCSR000BHM H1 Fine-tuned model
REST Task 2 ENCSR000BJJ SK-N-SH Fine-tuned model
REST Task 3 ENCSR000BJL HepG2 Fine-tuned model
REST Task 4 ENCSR000BJO Panc1 Fine-tuned model
REST Task 5 ENCSR000BJP PFSK-1 Fine-tuned model
REST Task 6 ENCSR000BMN HeLa-S3 Fine-tuned model
REST Task 7 ENCSR000BMW K562 Fine-tuned model
REST Task 8 ENCSR000BOT HepG2 Fine-tuned model
REST Task 9 ENCSR000BOX PFSK-1 Fine-tuned model
REST Task 10 ENCSR000BOZ SK-N-SH Fine-tuned model
REST Task 11 ENCSR000BPK Panc1 Fine-tuned model
REST Task 12 ENCSR000BQP A549 Fine-tuned model
REST Task 13 ENCSR000BQS GM12878 Fine-tuned model
REST Task 14 ENCSR000BTF HL-60 Fine-tuned model
REST Task 15 ENCSR137ZMQ K562 Fine-tuned model
REST Task 16 ENCSR663WAR H1 Fine-tuned model
REST Task 17 ENCSR867WPH liver Fine-tuned model
REST Task 18 ENCSR892DRK A549 Fine-tuned model
REST Task 19 ENCSR893QWP liver Fine-tuned model
REST All tasks N/A N/A Fine-tuned model