In [1]:
# Parameters
data_name = "Zfp322a"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:50:25,202 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Zfp322a: Motif: M09004_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Zfp322a
Unique Cell types only TF-MoDISco finds Zfp322a: #17

Cell typeModiscoHomer
pErythroblast;A;En

Pattern: metacluster_1/pattern_14

Significance: 0.05680319999999999

Absent
pCMP;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.023755599999999998

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.058503599999999996

Absent
proB;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0025896

Absent
preB;A;CL

Pattern: metacluster_1/pattern_22

Significance: 0.0478616

Absent
DC;A;En

Pattern: metacluster_1/pattern_17

Significance: 0.0484954

Absent
restingB;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0242884

Absent
aB;CD180;A;CL

Pattern: metacluster_1/pattern_19

Significance: 0.0241087

Absent
naiveT_SPLND;CD4+;D;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0321098

Absent
AML;D;En

Pattern: metacluster_1/pattern_22

Significance: 0.00253769

Absent
Erythroid;Ter119+;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.010933400000000001

Absent
MEF.GATA-1-ER;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.032693900000000005

Absent
DC_LPS;6h;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.0341662

Absent
BSPHL;A;CL

Pattern: metacluster_1/pattern_22

Significance: 0.0126565

Absent
MEL_Znc_di-cl;24h;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.012042

Absent
DC_BMD;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.00481469

Absent
Erythroblast;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.0306466

Absent
No Cell types only Homer finds Zfp322a