In [1]:
# Parameters
data_name = "Sebox"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:34:13,406 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Sebox: Motif: M02097_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sebox: #13

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00170797

Pattern: motif4.motif

Significance: 0.0537159

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.052506500000000005

Pattern: motif13.motif

Significance: 0.0266428

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000961495

Pattern: motif3.motif

Significance: 0.0403529

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00180093

Pattern: motif9.motif

Significance: 0.0115916

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00114374

Pattern: motif6.motif

Significance: 0.0411654

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00285987

Pattern: motif2.motif

Significance: 0.0189428

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0018295000000000002

Pattern: motif3.motif

Significance: 0.0306251

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00977101

Pattern: motif16.motif

Significance: 0.0291541

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.000822532

Pattern: motif13.motif

Significance: 0.015441899999999998

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00318727

Pattern: motif4.motif

Significance: 0.00814836

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0286139

Pattern: motif10.motif

Significance: 0.0408036

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0113319

/

Pattern: metacluster_0/pattern_8

Significance: 0.00233029

Pattern: motif3.motif

Significance: 0.0229263

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00110348

Pattern: motif14.motif

Significance: 0.0053328

Unique Cell types only TF-MoDISco finds Sebox: #20

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.003737

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0127158

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00163214

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00554296

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.029881

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00603763

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0553317

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0033134

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0584442

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.000712058

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0126876

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00161743

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00234799

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.012323299999999999

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05457530000000001

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00295037

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00737157

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00148984

Absent
Unique Cell types only Homer finds Sebox: #4

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.028676599999999997

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.0210285

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.0313909

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0183421