In [1]:
# Parameters
data_name = "Dlx5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:01:51,920 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Dlx5: Motif: M09195_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Dlx5: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0025696

Pattern: motif4.motif

Significance: 0.011156000000000001

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00163214

Pattern: motif5.motif

Significance: 0.0413234

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00210271

Pattern: motif3.motif

Significance: 0.00790397

BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.000138384

Pattern: motif7.motif

Significance: 0.047302699999999996

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.026991

Pattern: motif3.motif

Significance: 0.0426029

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00950793

Pattern: motif9.motif

Significance: 0.013073300000000001

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00590042

Pattern: motif3.motif

Significance: 8.79108e-05

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.022418900000000002

Pattern: motif6.motif

Significance: 0.0230665

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0060614

Pattern: motif2.motif

Significance: 0.0175295

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.007184

Pattern: motif3.motif

Significance: 0.015649700000000002

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.035117699999999995

Pattern: motif3.motif

Significance: 0.018314700000000003

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0220872

Pattern: motif13.motif

Significance: 0.017922900000000002

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.011342399999999999

Pattern: motif4.motif

Significance: 0.0130227

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00681362

Pattern: motif2.motif

Significance: 0.017799000000000002

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00598414

Pattern: motif2.motif

Significance: 0.02097

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.033019

Pattern: motif14.motif

Significance: 0.0246264

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.023000299999999998

Pattern: motif13.motif

Significance: 0.032032

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0122449

Pattern: motif6.motif

Significance: 0.026877099999999998

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0314807

Pattern: motif16.motif

Significance: 0.039279400000000006

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00524573

Pattern: motif2.motif

Significance: 0.0193222

Unique Cell types only TF-MoDISco finds Dlx5: #9

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0369166

/

Pattern: metacluster_0/pattern_25

Significance: 0.00554611

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00256058

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.051610300000000005

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0132192

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0262433

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0202852

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.036537400000000005

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.028198599999999997

Absent
Unique Cell types only Homer finds Dlx5: #5

Cell typeModiscoHomer
wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0367328

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0427586

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.018005700000000003

Fr_BRN;P0;D;EnAbsent

Pattern: motif10.motif

Significance: 0.042763300000000004

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0368874