# Parameters
data_name = "Barx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:58:23,406 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Barx1: Motif: M00413_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Barx1: #13

Cell type	Modisco	Homer
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.028206799999999997	Pattern: motif9.motif Significance: 0.031894099999999995
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.042457	Pattern: motif6.motif Significance: 0.0304739
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00741766	Pattern: motif2.motif Significance: 0.0141719
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.007184	Pattern: motif3.motif Significance: 0.017509599999999997
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.0396349	Pattern: motif13.motif Significance: 0.0268351
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.0206087	Pattern: motif4.motif Significance: 0.027358799999999996
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.012050100000000001	Pattern: motif2.motif Significance: 0.0079633
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.012191500000000001	Pattern: motif2.motif Significance: 0.00751013
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.0314099	Pattern: motif10.motif Significance: 0.0369849
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0381465	Pattern: motif13.motif Significance: 0.0289082
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0306139	Pattern: motif6.motif Significance: 0.0357616
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0442429	Pattern: motif14.motif Significance: 0.046570099999999996
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.010471799999999998	Pattern: motif2.motif Significance: 0.0103159

Unique Cell types only TF-MoDISco finds Barx1: #15

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.0539398	Absent
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00517253	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00451629	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00445631	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.0127158	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.0244058	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.04384469999999999	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0488448	Absent
LVR;8wks;D;En	Pattern: metacluster_0/pattern_14 Significance: 0.0588259	Absent
NPC;G4;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0452283	Absent
iPV_NRN;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.011029	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0204784	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.030568099999999997	Absent
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_8 Significance: 0.0456737	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.020696	Absent

Unique Cell types only Homer finds Barx1: #5

Cell type	Modisco	Homer
wES.CRNL_NRL_CRST;E10.5;A;GEO	Absent	Pattern: motif3.motif Significance: 0.047455000000000004
iVIP_NRN;A;GEO	Absent	Pattern: motif3.motif Significance: 0.037588199999999995
Melanotrope;A;GEO	Absent	Pattern: motif17.motif Significance: 0.043919599999999996
CN_PHT_RCPTR;A;GEO	Absent	Pattern: motif8.motif Significance: 0.0304361
wES;3rd_Rhmbmr;E8.5;A;GEO	Absent	Pattern: motif16.motif Significance: 0.0353425