# Parameters
data_name = "Trp73"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:46:25,016 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Trp73: Motif: M09339_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Trp73: #2

Cell type	Modisco	Homer
Adipose;D;En	Pattern: metacluster_0/pattern_4 Significance: 6.34851e-08	Pattern: motif5.motif Significance: 8.93931e-06
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 2.39969e-09	Pattern: motif9.motif Significance: 0.00375957

Unique Cell types only TF-MoDISco finds Trp73: #9

Cell type	Modisco	Homer
ES;ZhBTc4;1;D;GEO	Pattern: metacluster_1/pattern_22 Significance: 1.64284e-05	Absent
Mammary_GLND;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 1.04191e-07	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_3 Significance: 1.2157500000000001e-08	Absent
CH12.LX;D;En	Pattern: metacluster_1/pattern_21 Significance: 1.23102e-05	Absent
ES;E14;A;CL	Pattern: metacluster_1/pattern_18 Significance: 0.0273166	Absent
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_22 Significance: 7.009410000000001e-08	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_20 Significance: 1.42647e-05	Absent
npES;ZHBTC4;doxyc;treat;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 1.8322e-06	Absent
Mammary_BptfKO;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 3.8957500000000005e-07	Absent

No Cell types only Homer finds Trp73