In [1]:
# Parameters
data_name = "Rora"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:32:03,127 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Rora: Motif: M00819_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Rora: #7

Cell typeModiscoHomer
RTN;D1;D;En

Pattern: metacluster_0/pattern_10

Significance: 0.00760343

Pattern: motif8.motif

Significance: 0.0120972

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.0185325

Pattern: motif21.motif

Significance: 0.013203200000000002

ILC3;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00254576

Pattern: motif10.motif

Significance: 0.0154343

iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.00956795

Pattern: motif10.motif

Significance: 0.00458858

ILC3_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00392501

Pattern: motif8.motif

Significance: 0.00654607

NCR+ILC3;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00688681

/

Pattern: metacluster_1/pattern_7

Significance: 0.053237900000000005

Pattern: motif5.motif

Significance: 0.0316444

npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.0420071

Pattern: motif32.motif

Significance: 0.0510919

Unique Cell types only TF-MoDISco finds Rora: #30

Cell typeModiscoHomer
STMCH;P0;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.053111

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.0459792

Absent
ROD_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.014712000000000001

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.045765

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.012706499999999999

/

Pattern: metacluster_1/pattern_18

Significance: 0.05885599999999999

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.017484799999999998

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0243348

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0229652

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.000626344

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0346481

/

Pattern: metacluster_0/pattern_13

Significance: 0.05460369999999999

Absent
BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_6

Significance: 0.056490599999999995

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0411055

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.0075513

Absent
NCR+ILC3+IL23;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.00134605

Absent
ILC2;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0568836

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0567245

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0385031

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.04524280000000001

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.041460199999999996

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.0290027

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.059728300000000005

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00136882

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00014539999999999998

Absent
ILC2+IL33+IL25;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0440202

Absent
ILC1;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.028975

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.014333600000000002

Absent
ILC1_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.0285689

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0148964

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0200073

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.027559800000000002

Absent
Unique Cell types only Homer finds Rora: #2

Cell typeModiscoHomer
ES;ZhBTc4;untreated;A;GEOAbsent

Pattern: motif19.motif

Significance: 0.0530275

Muscle;A;CLAbsent

Pattern: motif9.motif

Significance: 0.027172900000000003