# Parameters
data_name = "Pbx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:27:21,259 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pbx1: Motif: M00513_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pbx1: #6

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.054885199999999995	Pattern: motif4.motif Significance: 0.0336056
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_11 Significance: 0.034130900000000006	Pattern: motif8.motif Significance: 0.055817099999999994
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 2.4812399999999996e-05	Pattern: motif8.motif Significance: 0.0219249
BRN;PTMN;A;CL	Pattern: metacluster_1/pattern_15 Significance: 0.032563	Pattern: motif8.motif Significance: 0.00495795
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.0227724	Pattern: motif5.motif Significance: 0.0288543
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.000440972	Pattern: motif9.motif Significance: 0.0415854

Unique Cell types only TF-MoDISco finds Pbx1: #6

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.040883499999999996	Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL	Pattern: metacluster_1/pattern_16 Significance: 0.0510645	Absent
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.03160809999999999	Absent
Tfh_LCMV;A;CL	Pattern: metacluster_1/pattern_16 Significance: 0.05855930000000001	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_22 Significance: 0.00048300000000000003 / Pattern: metacluster_0/pattern_24 Significance: 0.000847355	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_17 Significance: 0.0395708	Absent

Unique Cell types only Homer finds Pbx1: #4

Cell type	Modisco	Homer
SKLTL_Muscle;8wks;D;En	Absent	Pattern: motif11.motif Significance: 0.04725719999999999
wES;Hnd_lmb;E11.5;D;En	Absent	Pattern: motif3.motif Significance: 0.0528914
wES;Md_BRN;E11.5;D;En	Absent	Pattern: motif20.motif Significance: 0.050535500000000004
wES;MSDRM;E11.5;D;En	Absent	Pattern: motif2.motif Significance: 0.0463649