# Parameters
data_name = "Obox3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:26:22,101 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Obox3: Motif: M00523_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Obox3: #2

Cell type	Modisco	Homer
CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.016481799999999998	Pattern: motif2.motif Significance: 0.024281
ROD_PHT_RCPTR_RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.024632499999999998	Pattern: motif3.motif Significance: 0.029405

Unique Cell types only TF-MoDISco finds Obox3: #9

Cell type	Modisco	Homer
eye-NRL_RTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.0338251	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_15 Significance: 0.03301969999999999	Absent
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.00708619	Absent
Corticotrope;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0390103	Absent
wES;Hnd_BRN;E11.5;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.0160468	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.00654758	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.0193269	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.0221727	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.0242351	Absent

Unique Cell types only Homer finds Obox3: #4

Cell type	Modisco	Homer
RTN;A;GEO	Absent	Pattern: motif2.motif Significance: 0.0140863
RTN;D1;D;En	Absent	Pattern: motif5.motif Significance: 0.029830799999999998
GCN_PHT_RCPTR;A;GEO	Absent	Pattern: motif2.motif Significance: 0.015996200000000002
ROD_PHT_RCPTR;A;GEO	Absent	Pattern: motif2.motif Significance: 0.014713399999999998