In [1]:
# Parameters
data_name = "Hoxc9"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:23,727 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxc9: Motif: M09574_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxc9: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00213971

/

Pattern: metacluster_0/pattern_25

Significance: 0.0501805

Pattern: motif4.motif

Significance: 0.031376999999999995

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00697761

/

Pattern: metacluster_0/pattern_5

Significance: 0.00036261400000000004

Pattern: motif8.motif

Significance: 0.015152200000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 1.0613800000000002e-05

/

Pattern: metacluster_0/pattern_3

Significance: 0.00647187

Pattern: motif5.motif

Significance: 0.0013061

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.00288234

Pattern: motif6.motif

Significance: 0.0185058

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 8.02276e-05

Pattern: motif5.motif

Significance: 0.00219717

npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00174116

/

Pattern: metacluster_0/pattern_7

Significance: 0.00269296

Pattern: motif7.motif

Significance: 0.0342317

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0258233

Pattern: motif4.motif

Significance: 0.0511712

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0169049

Pattern: motif9.motif

Significance: 0.028333099999999996

Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 6.35961e-08

Pattern: motif17.motif

Significance: 0.0487625

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00714259

Pattern: motif13.motif

Significance: 0.03778959999999999

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_0

Significance: 1.04682e-06

/

Pattern: metacluster_0/pattern_5

Significance: 0.0126876

Pattern: motif2.motif

Significance: 2.71629e-05

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.030040699999999997

Pattern: motif3.motif

Significance: 0.013162100000000001

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 2.75463e-06

Pattern: motif15.motif

Significance: 0.0482362

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0239296

Pattern: motif3.motif

Significance: 0.0232483

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.012649500000000001

KDNY;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 1.3183499999999998e-05

Pattern: motif4.motif

Significance: 0.0102311

Unique Cell types only TF-MoDISco finds Hoxc9: #27

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 3.88479e-05

Absent
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0139593

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0005673540000000001

/

Pattern: metacluster_1/pattern_13

Significance: 0.00803508

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0309658

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00537453

Absent
AML;D;En

Pattern: metacluster_1/pattern_18

Significance: 6.324270000000001e-05

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0308678

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0322754

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00581348

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.029620799999999996

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.0027925000000000003

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.011009

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0505839

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.035117699999999995

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.010447

Absent
Adrenal;A;CL

Pattern: metacluster_1/pattern_10

Significance: 6.9313e-06

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 5.501469999999999e-06

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0169137

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_20

Significance: 7.28078e-05

Absent
CLP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.00227133

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 7.71131e-07

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0164428

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0464026

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0446369

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0142121

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0248108

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0117914

Absent
Unique Cell types only Homer finds Hoxc9: #2

Cell typeModiscoHomer
Muller;P12;D;EnAbsent

Pattern: motif4.motif

Significance: 0.026146199999999998

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.028077800000000003