In [1]:
# Parameters
data_name = "Hoxb6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:46,990 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxb6: Motif: M00381_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxb6: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.052355200000000005

Pattern: motif3.motif

Significance: 0.016062299999999998

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00636456

Pattern: motif4.motif

Significance: 0.023074200000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.054429099999999994

/

Pattern: metacluster_0/pattern_3

Significance: 0.00595577

Pattern: motif3.motif

Significance: 0.022765

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.03901369999999999

Pattern: motif4.motif

Significance: 0.051483900000000006

Unique Cell types only TF-MoDISco finds Hoxb6: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0435096

/

Pattern: metacluster_0/pattern_25

Significance: 0.0205294

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00722958

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0049209

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00137997

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.044773900000000005

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0178149

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.015973599999999998

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.058605700000000004

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.015100299999999999

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0277046

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0238252

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0478436

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.049881800000000004

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0437092

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.020796400000000003

Absent
Unique Cell types only Homer finds Hoxb6: #1

Cell typeModiscoHomer
KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.05674490000000001