# Parameters
data_name = "Hnf1a"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:11:39,257 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 3.48902e-05 |
Significance: 0.00328086 |
npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 1.2527899999999999e-05 |
Significance: 0.00293052 |
wES;LVR;E11.5;D.;En |
Significance: 5.8002e-05 |
Significance: 0.00292759 |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.026868299999999998 |
Significance: 0.044849400000000005 |
wES;posterior;1;E8.5;A;GEO |
Significance: 4.13111e-06 |
Significance: 0.00257148 |
LVR;P0;D;En |
Significance: 6.42121e-05 |
Significance: 0.00194577 |
LRG_INTSTN;8wks;D;En |
Significance: 6.04041e-05 |
Significance: 0.00179516 |
STMCH;P0;D;En |
Significance: 2.3941399999999997e-05 |
Significance: 0.00220033 |
aB;A;GEO |
Significance: 9.441219999999999e-05 |
Significance: 0.00315457 |
prePLSM_B;A;GEO |
Significance: 1.02874e-05 |
Significance: 0.00326487 |
BCK_SKN;A;GEO |
Significance: 0.028670299999999996 |
Significance: 0.0425691 |
LVR;8wks;D;GEO |
Significance: 2.83852e-05 |
Significance: 0.00251963 |
G_NRN_P;A;GEO |
Significance: 0.0556928 |
Significance: 0.048135000000000004 |
SML_INTSTN;A;CL |
Significance: 4.73668e-05 |
Significance: 0.00189973 |
LRG_INTSTN;A;CL |
Significance: 0.000268246 |
Significance: 0.00298933 |
Muller;P12;D;En |
Significance: 0.05542869999999999 |
Significance: 0.0516467 |
wES;Hnd_BRN;E14.5;D;En |
Significance: 0.0499855 |
Significance: 0.0315945 |
Md_BRN;D;En |
Significance: 0.0150944 |
Significance: 0.059194000000000004 |
KDNY;P0;D;En |
Significance: 0.000100663 |
Significance: 0.00286361 |
KDNY;8wks;D;En |
Significance: 2.8261e-05 |
Significance: 0.00216799 |
Cell type | Modisco | Homer |
---|---|---|
wES;limb;E11.5;D;En |
Significance: 0.0363869 | Absent |
wES;Fr_lmb;E11.5;D;En |
Significance: 0.034484100000000004 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.0383166 | Absent |
npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0561059 | Absent |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0371747 | Absent |
npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.043664800000000004 | Absent |
npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 4.20883e-05 | Absent |
wES;posterior;2;E9.5;A;GEO |
Significance: 0.052224099999999996 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 3.4314000000000004e-05 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0565866 | Absent |
STMCH;A;CL |
Significance: 3.89242e-05 | Absent |
wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.0258947 | Absent |
LVR;8wks;D;En |
Significance: 3.23493e-05 | Absent |
LNG;8wks;D;En |
Significance: 3.1506e-05 | Absent |
wES;LNG;E14.5;D;En |
Significance: 0.000816129 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0515828 | Absent |
RTN;D1;D;En |
Significance: 0.0457691 | Absent |
wES;RTN;E11.5;D;En |
Significance: 0.0308245 | Absent |
wES;MSDRM;E11.5;D;En |
Significance: 0.0575054 | Absent |
wES.Fr_BRN;E14.4;D;En |
Significance: 0.0238252 | Absent |
Fr_BRN;P0;D;En |
Significance: 0.023234900000000003 | Absent |
Hnd_BRN;P0;D;En |
Significance: 0.045549099999999995 | Absent |
wES;Md_BRN;E14.4;D;En |
Significance: 0.0206922 | Absent |
wES;WHL_BRN;E14.5;D;En |
Significance: 0.023600299999999998 | Absent |
Cell type | Modisco | Homer |
---|---|---|
iVIP_NRN;A;GEO | Absent |
Significance: 0.055521100000000004 |
Melanotrope;A;GEO | Absent |
Significance: 0.053136699999999995 |