In [1]:
# Parameters
data_name = "Hnf1a"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend.
2019-08-23 11:11:39,257 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)
TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hnf1a: Motif: M09191_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hnf1a: #20

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 3.48902e-05

Pattern: motif16.motif

Significance: 0.00328086

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 1.2527899999999999e-05

/

Pattern: metacluster_0/pattern_20

Significance: 0.043548

/

Pattern: metacluster_0/pattern_26

Significance: 0.0471571

Pattern: motif25.motif

Significance: 0.00293052

wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_14

Significance: 5.8002e-05

Pattern: motif24.motif

Significance: 0.00292759

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.026868299999999998

Pattern: motif3.motif

Significance: 0.044849400000000005

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 4.13111e-06

Pattern: motif16.motif

Significance: 0.00257148

LVR;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 6.42121e-05

Pattern: motif14.motif

Significance: 0.00194577

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_8

Significance: 6.04041e-05

Pattern: motif8.motif

Significance: 0.00179516

STMCH;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 2.3941399999999997e-05

Pattern: motif14.motif

Significance: 0.00220033

aB;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 9.441219999999999e-05

Pattern: motif22.motif

Significance: 0.00315457

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 1.02874e-05

Pattern: motif18.motif

Significance: 0.00326487

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.028670299999999996

Pattern: motif9.motif

Significance: 0.0425691

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_7

Significance: 2.83852e-05

Pattern: motif7.motif

Significance: 0.00251963

/

Pattern: motif15.motif

Significance: 0.0482277

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0556928

Pattern: motif13.motif

Significance: 0.048135000000000004

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_10

Significance: 4.73668e-05

Pattern: motif11.motif

Significance: 0.00189973

LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.000268246

Pattern: motif7.motif

Significance: 0.00298933

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.05542869999999999

Pattern: motif4.motif

Significance: 0.0516467

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0499855

Pattern: motif3.motif

Significance: 0.0315945

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0150944

Pattern: motif14.motif

Significance: 0.059194000000000004

KDNY;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.000100663

Pattern: motif19.motif

Significance: 0.00286361

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_3

Significance: 2.8261e-05

Pattern: motif3.motif

Significance: 0.00216799

Unique Cell types only TF-MoDISco finds Hnf1a: #24

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0363869

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.034484100000000004

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0383166

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0561059

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0371747

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.043664800000000004

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 4.20883e-05

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.052224099999999996

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 3.4314000000000004e-05

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0565866

/

Pattern: metacluster_0/pattern_12

Significance: 2.42264e-05

Absent
STMCH;A;CL

Pattern: metacluster_1/pattern_13

Significance: 3.89242e-05

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0258947

Absent
LVR;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 3.23493e-05

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_23

Significance: 3.1506e-05

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.000816129

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0515828

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0457691

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0308245

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0575054

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0238252

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.045549099999999995

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0206922

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.023600299999999998

Absent
Unique Cell types only Homer finds Hnf1a: #2

Cell typeModiscoHomer
iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.055521100000000004

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.053136699999999995