In [1]:
# Parameters
data_name = "Bsx"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:59:13,025 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Bsx: Motif: M00516_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Bsx: #13

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00103406

Pattern: motif4.motif

Significance: 0.04180759999999999

/

Pattern: motif8.motif

Significance: 0.05782809999999999

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00183559

Pattern: motif3.motif

Significance: 0.023415099999999998

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00689901

Pattern: motif9.motif

Significance: 0.00833081

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.025812799999999997

Pattern: motif6.motif

Significance: 0.0479638

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00583716

Pattern: motif2.motif

Significance: 0.02431

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00386711

Pattern: motif3.motif

Significance: 0.0206472

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.041410300000000004

Pattern: motif13.motif

Significance: 0.0176275

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0151756

Pattern: motif4.motif

Significance: 0.00645219

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00494004

Pattern: motif2.motif

Significance: 0.033021499999999995

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00349766

Pattern: motif2.motif

Significance: 0.030481599999999998

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00768383

Pattern: motif6.motif

Significance: 0.0398889

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0175571

Pattern: motif14.motif

Significance: 0.025059599999999998

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0035131

Pattern: motif2.motif

Significance: 0.0377459

Unique Cell types only TF-MoDISco finds Bsx: #10

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.0241743

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0140107

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00223878

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.011068600000000001

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00137997

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00401248

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.016833599999999997

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0322895

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.047448199999999996

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0467876

Absent
Unique Cell types only Homer finds Bsx: #6

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0215532

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0166082

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0230688

BL_CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.0589181

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.049812

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0446913