In [1]:
# Parameters
data_name = "Barx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:58:25,550 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Barx2: Motif: M00457_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Barx2: #5

Cell typeModiscoHomer
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.024273

Pattern: motif9.motif

Significance: 0.058935900000000006

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.052355200000000005

Pattern: motif3.motif

Significance: 0.0263833

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.013743100000000001

Pattern: motif3.motif

Significance: 0.0561818

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0394691

Pattern: motif3.motif

Significance: 0.042763199999999994

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0325441

Pattern: motif4.motif

Significance: 0.0372921

Unique Cell types only TF-MoDISco finds Barx2: #19

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.0199182

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00570648

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00501703

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00533454

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0559028

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00820366

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.047668699999999994

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00174116

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0275289

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0144495

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0315799

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0174955

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00462222

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.055524800000000006

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.013719899999999998

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0131222

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0325866

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0175571

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.011372499999999999

Absent
Unique Cell types only Homer finds Barx2: #1

Cell typeModiscoHomer
KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0555196