# Parameters
data_name = "Arid3b"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:57:28,803 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Arid3b: Motif: M01659_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Arid3b: #4

Cell type	Modisco	Homer
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.013962200000000001 / Pattern: metacluster_0/pattern_8 Significance: 0.0318666	Pattern: motif3.motif Significance: 0.013281799999999998
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.00829087	Pattern: motif14.motif Significance: 0.019182499999999998
MTR_NRN_MN1;methyl3;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0492485	Pattern: motif6.motif Significance: 0.0538289
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.048059199999999996	Pattern: motif4.motif Significance: 0.035547

Unique Cell types only TF-MoDISco finds Arid3b: #27

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.027608999999999998	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.029659699999999997	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0226124	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_7 Significance: 0.0309658	Absent
MN1;D;En	Pattern: metacluster_1/pattern_9 Significance: 0.0500104	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.023885	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.0214983	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0147797	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.0321758	Absent
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.058875699999999996	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.0221461	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.025952999999999997	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.034935400000000005	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0577375	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.028869299999999997	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0171296	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0164428	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0519856	Absent
NPC;G4;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0562981	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0380199	Absent
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.00649328	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.021066099999999997	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.020928799999999997	Absent
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.0389596	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.00382263	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.011917299999999999	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0198251	Absent

No Cell types only Homer finds Arid3b