Index of /kundaje/marinovg/oak/various/papers/2019_NComm_CTCF-screen/2018-03-11-CTCF-ChIP-seq-run

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]DESeq2/2018-03-18 07:30 -  
[DIR]SAMstats/2018-03-15 10:33 -  
[DIR]SPP-300K-CTCF_N4293-ChIP.2x75mers-trimmed.bwa-mem.hg19-female.dedup.merged/2018-03-18 04:26 -  
[DIR]SPP-300K-CTCF_N4293-ChIP.pseudoRep1.2x75mers-trimmed.bwa-mem.hg19-female.dedup.merged/2018-03-18 00:50 -  
[DIR]SPP-300K-CTCF_N4293-ChIP.pseudoRep2.2x75mers-trimmed.bwa-mem.hg19-female.dedup.merged/2018-03-18 00:53 -  
[DIR]SPP-300K-L119-CRISPRa-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup/2018-03-18 00:15 -  
[DIR]SPP-300K-L120-CRISPRk-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup/2018-03-18 00:41 -  
[DIR]SPP-300K-L130-CRISPRi-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup/2018-03-18 00:09 -  
[DIR]browser-snapshots/2018-03-18 09:33 -  
[ ]sgRNAs.5635.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-outersection12018-03-18 08:54 0  
[ ]sgRNAs.14376.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-outersection12018-03-18 08:54 0  
[ ]sgRNAs.15776.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-outersection12018-03-18 08:54 0  
[ ]sgRNAs.14376.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection12018-03-18 08:54 23  
[ ]sgRNAs.14376.1Mb.bed2018-03-18 08:40 23  
[ ]sgRNAs.15776.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection12018-03-18 08:54 23  
[ ]sgRNAs.15776.1Mb.bed2018-03-18 08:40 23  
[ ]sgRNAs.5635.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection12018-03-18 08:54 24  
[ ]sgRNAs.5635.1Mb.bed2018-03-18 08:31 24  
[ ]sgRNAs.1kb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-outersection12018-03-18 08:54 40  
[ ]cumulativeGeneProfiles.files2018-03-13 13:45 108  
[ ]sgRNAs.1kb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection12018-03-18 08:54 451  
[ ]CRISPR.guides.bed2018-03-17 07:46 491  
[ ]sgRNAs.1kb.bed2018-03-18 07:45 491  
[TXT]bcl2fastq.sh2018-03-13 04:43 708  
[TXT]SampleSheet.csv2018-03-13 04:48 1.1K 
[ ]SPP-IDR2018-03-18 06:31 1.2K 
[ ]SPP-IDR-region-stats2018-03-18 06:52 1.5K 
[ ]MACS2018-03-17 22:53 1.5K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.files2018-03-18 07:33 1.8K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.readCounts.files2018-03-18 06:57 1.8K 
[TXT]SPP-peaks.sh2018-03-17 21:52 1.9K 
[ ]MACS-region-stats2018-03-17 23:03 1.9K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled.files2018-03-18 08:53 1.9K 
[ ]InsLen.files2018-03-13 13:48 2.0K 
[ ]sgRNAs.1kb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection22018-03-18 08:54 2.6K 
[ ]SAMstats.table2018-03-14 08:21 2.8K 
[TXT]idr.sh2018-03-18 05:57 3.2K 
[ ]SAMstats.files2018-03-13 14:00 3.6K 
[TXT]SPP.sh2018-03-14 03:27 3.8K 
[ ]sgRNAs.14376.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection22018-03-18 08:54 4.6K 
[ ]sgRNAs.15776.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection22018-03-18 08:54 4.8K 
[ ]sgRNAs.5635.1Mb-vsSPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled-intersection22018-03-18 08:54 5.1K 
[TXT]macs2.sh2018-03-17 22:39 5.4K 
[TXT]bwa.sh2018-03-16 15:07 8.6K 
[TXT]bwa-rerun.sh2018-03-16 17:50 8.9K 
[ ]CRISPR.guides.sorted.bigBed2018-03-17 07:47 13K 
[ ]z2018-03-18 11:50 15K 
[TXT]map-bowtie.sh2018-03-13 22:59 24K 
[ ]wget-log2018-03-18 12:09 53K 
[ ]InsLen.table2018-03-14 08:22 83K 
[ ]cumulativeGeneProfiles.1000bp.table2018-03-13 18:58 115K 
[IMG]SPP-IDR-CTCF_N4293-ChIP.pseudoReps.png2018-03-18 06:00 206K 
[IMG]SPP-IDR-CTCF_N4293-ChIP.L119-L120.png2018-03-18 06:05 309K 
[IMG]SPP-IDR-CTCF_N4293-ChIP.L119-L130.png2018-03-18 06:04 381K 
[IMG]SPP-IDR-CTCF_N4293-ChIP.L129-L130.png2018-03-18 06:04 385K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L130-CRISPRi-CTCF_N4293-CTCF.readCounts.bz22018-03-18 06:50 419K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L120-CRISPRk-CTCF_N4293-CTCF.readCounts.bz22018-03-18 06:48 420K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L117-CRISPRa-CTCF_13189-CTCF.readCounts.bz22018-03-18 06:50 421K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L122-CRISPRk-CTCF_12040-CTCF.readCounts.bz22018-03-18 06:50 422K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L118-CRISPRa-CTCF_15173-CTCF.readCounts.bz22018-03-18 06:54 422K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L116-CRISPRa-CTCF_11698-CTCF.readCounts.bz22018-03-18 06:51 423K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L119-CRISPRa-CTCF_N4293-CTCF.readCounts.bz22018-03-18 06:48 423K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L123-CRISPRk-CTCF_13004-CTCF.readCounts.bz22018-03-18 06:52 425K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L128-CRISPRi-CTCF_15923-CTCF.readCounts.bz22018-03-18 06:52 426K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L125-CRISPRk-CTCF_14376-CTCF.readCounts.bz22018-03-18 06:52 426K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L129-CRISPRi-CTCF_8004-CTCF.readCounts.bz22018-03-18 06:51 426K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L121-CRISPRk-CTCF_8005-CTCF.readCounts.bz22018-03-18 06:51 427K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L126-CRISPRk-CTCF_15776-CTCF.readCounts.bz22018-03-18 06:51 427K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L115-CRISPRa-CTCF_7140-CTCF.readCounts.bz22018-03-18 06:48 428K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L127-CRISPRi-CTCF_5635-CTCF.readCounts.bz22018-03-18 06:51 428K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L124-CRISPRk-CTCF_14259-CTCF.readCounts.bz22018-03-18 06:52 428K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L130-CRISPRi-CTCF_N4293-CTCF.RPM.bz22018-03-18 06:47 667K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L130-CRISPRi-CTCF_N4293-CTCF.RPM.rescaled.bz22018-03-18 08:52 669K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L120-CRISPRk-CTCF_N4293-CTCF.RPM.bz22018-03-18 06:47 669K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L120-CRISPRk-CTCF_N4293-CTCF.RPM.rescaled.bz22018-03-18 08:52 669K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L117-CRISPRa-CTCF_13189-CTCF.RPM.rescaled.bz22018-03-18 08:52 669K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L117-CRISPRa-CTCF_13189-CTCF.RPM.bz22018-03-18 06:47 669K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L119-CRISPRa-CTCF_N4293-CTCF.RPM.bz22018-03-18 06:47 671K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L119-CRISPRa-CTCF_N4293-CTCF.RPM.rescaled.bz22018-03-18 08:52 671K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L118-CRISPRa-CTCF_15173-CTCF.RPM.bz22018-03-18 06:47 672K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L122-CRISPRk-CTCF_12040-CTCF.RPM.bz22018-03-18 06:47 672K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L122-CRISPRk-CTCF_12040-CTCF.RPM.rescaled.bz22018-03-18 08:52 672K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L118-CRISPRa-CTCF_15173-CTCF.RPM.rescaled.bz22018-03-18 08:52 674K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L116-CRISPRa-CTCF_11698-CTCF.RPM.rescaled.bz22018-03-18 08:51 674K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L116-CRISPRa-CTCF_11698-CTCF.RPM.bz22018-03-18 06:47 676K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L123-CRISPRk-CTCF_13004-CTCF.RPM.bz22018-03-18 06:48 677K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L123-CRISPRk-CTCF_13004-CTCF.RPM.rescaled.bz22018-03-18 08:52 679K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L128-CRISPRi-CTCF_15923-CTCF.RPM.bz22018-03-18 06:49 680K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L125-CRISPRk-CTCF_14376-CTCF.RPM.bz22018-03-18 06:48 680K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L126-CRISPRk-CTCF_15776-CTCF.RPM.bz22018-03-18 06:50 681K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L125-CRISPRk-CTCF_14376-CTCF.RPM.rescaled.bz22018-03-18 08:52 681K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L121-CRISPRk-CTCF_8005-CTCF.RPM.rescaled.bz22018-03-18 08:52 682K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L129-CRISPRi-CTCF_8004-CTCF.RPM.bz22018-03-18 06:48 682K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L128-CRISPRi-CTCF_15923-CTCF.RPM.rescaled.bz22018-03-18 08:52 682K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L121-CRISPRk-CTCF_8005-CTCF.RPM.bz22018-03-18 06:48 683K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L124-CRISPRk-CTCF_14259-CTCF.RPM.rescaled.bz22018-03-18 08:52 683K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L126-CRISPRk-CTCF_15776-CTCF.RPM.rescaled.bz22018-03-18 08:52 683K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L129-CRISPRi-CTCF_8004-CTCF.RPM.rescaled.bz22018-03-18 08:52 683K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L115-CRISPRa-CTCF_7140-CTCF.RPM.rescaled.bz22018-03-18 08:50 684K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L115-CRISPRa-CTCF_7140-CTCF.RPM.bz22018-03-18 06:48 684K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L124-CRISPRk-CTCF_14259-CTCF.RPM.bz22018-03-18 06:48 684K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L127-CRISPRi-CTCF_5635-CTCF.RPM.bz22018-03-18 06:48 686K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.L127-CRISPRi-CTCF_5635-CTCF.RPM.rescaled.bz22018-03-18 08:52 687K 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.narrowPeak2018-03-18 06:25 2.6M 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.readCounts.table2018-03-18 06:58 4.7M 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.052018-03-18 06:23 5.7M 
[ ]SPP-IDR-CTCF_N4293-ChIP.L129-L1302018-03-18 06:04 7.2M 
[TXT]FIMO-CIS-BP-Homo_sapiens.fimo.txt.annotated.CTCF.sorted.bigBed2018-03-17 07:25 7.7M 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L1302018-03-18 06:04 8.0M 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L1202018-03-18 06:05 8.1M 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.rescaled.table2018-03-18 08:53 10M 
[ ]SPP-IDR-CTCF_N4293-ChIP.L119-L130.IDR_0.05.RPM.table2018-03-18 07:34 10M 
[ ]SPP-IDR-CTCF_N4293-ChIP.pseudoReps2018-03-18 06:00 11M 
[ ]FIMO-CIS-BP-Homo_sapiens.fimo.txt.annotated.CTCF.bz22018-03-17 07:20 13M 
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