/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L115-CRISPRa-CTCF_7140-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L110-CRISPRa-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L115-CRISPRa-CTCF_7140-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L116-CRISPRa-CTCF_11698-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L110-CRISPRa-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L116-CRISPRa-CTCF_11698-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L117-CRISPRa-CTCF_13189-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L110-CRISPRa-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L117-CRISPRa-CTCF_13189-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L118-CRISPRa-CTCF_15173-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L110-CRISPRa-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L118-CRISPRa-CTCF_15173-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L119-CRISPRa-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L110-CRISPRa-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L119-CRISPRa-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L120-CRISPRk-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L120-CRISPRk-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L121-CRISPRk-CTCF_8005-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L121-CRISPRk-CTCF_8005-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L122-CRISPRk-CTCF_12040-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L122-CRISPRk-CTCF_12040-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L123-CRISPRk-CTCF_13004-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L123-CRISPRk-CTCF_13004-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L124-CRISPRk-CTCF_14259-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L124-CRISPRk-CTCF_14259-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L125-CRISPRk-CTCF_14376-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L125-CRISPRk-CTCF_14376-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L126-CRISPRk-CTCF_15776-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L126-CRISPRk-CTCF_15776-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L127-CRISPRi-CTCF_5635-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L112-CRISPRi-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L127-CRISPRi-CTCF_5635-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L128-CRISPRi-CTCF_15923-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L112-CRISPRi-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L128-CRISPRi-CTCF_15923-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L129-CRISPRi-CTCF_8004-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L112-CRISPRi-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L129-CRISPRi-CTCF_8004-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L130-CRISPRi-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -c L112-CRISPRi-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -n L130-CRISPRi-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.MACS2 -g hs -f BAM --keep-dup all